PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 804aa    MW: 87974.8 Da    PI: 7.0626
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.7e-15107151147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+ E++++++a k++G   W +I +++g ++t+ q++s+ qk+
  LPERR08G03480.1 107 RERWTEAEHKRFLEALKLYGRA-WQRIEEHVG-TKTAVQIRSHAQKF 151
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-16101157IPR009057Homeodomain-like
PROSITE profilePS5129419.147102156IPR017930Myb domain
TIGRFAMsTIGR015571.9E-16105154IPR006447Myb domain, plants
SMARTSM007176.5E-12106154IPR001005SANT/Myb domain
PfamPF002491.7E-12107150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-8107147IPR009057Homeodomain-like
CDDcd001671.20E-8109152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    Send to blast
MTMLLSRRRR GRPWPACGGL GLLRGASQRA RRQRTRFDST GLLCLLEVCD HASRATAVGW  60
HLFVVLCCVR LKEVSGLSRL TAIGSIQINS SGEEAMVRKP YTITKQRERW TEAEHKRFLE  120
ALKLYGRAWQ RIEEHVGTKT AVQIRSHAQK FFTKLEKEAI NNGTSPGQAH DIDIPPPRPK  180
RKPNSPYPRK SCLSSETSTR EIPNDKATKS NLTVNSTAQM AGDAALEKLQ RKEISEKGSC  240
SEVLNLFREA PSASFSSVNK SSSNHGASRG LEPTKTEIKD VVILERDGIS NGAGKNVKDI  300
NDQETERLNG IHISSKSDHS HENCLDTSRQ QLKPKATAVE PTYVDWSAAK TSHCQMDRNG  360
ATGFPATGTE GSHPDQTSDQ TGRTSETMNQ CIHPTLSVDP KFDSTATAQP FPHNYAAFAP  420
MMQCHCNQDS YRSFVNMSST FSSMLVSTLL SNPAIHAAAR LAASYWPAVD GNSADPNQED  480
LSESAQGSHA GSPPNMASIV AATVAAASAW WATQGLLPLF PPPIAFPFVP APSTPFPAAD  540
VQRAPEKDMN CPIDSAQKEM QETQKQDNPE AIKVIMSSES DESGKGEVSL HTELKISPAD  600
KADATPTTGA DTSDVFGNKK KQDRSSCGSN TPSSSDHDIE ADNAPEKQEK ANDKAKQASC  660
SNSSAGDNNH RRFRSSGSTS DSWKEVSEEG RLAFDALFSR ERLPQSFSPP QAEESKEISK  720
EEEDEVTTVT VDLNKNATII DHELDTVDDP RAFFPNELSN LKLKSRRTGF KPYKRCSVEA  780
KENRVPASDE VGTKRIRLDS ETST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12835RARRQRTR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427710.0AK242771.1 Oryza sativa Japonica Group cDNA, clone: J090053J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649844.10.0protein LHY isoform X2
RefseqXP_015649845.10.0protein LHY isoform X2
TrEMBLA0A0D9X4L50.0A0A0D9X4L5_9ORYZ; Uncharacterized protein
STRINGLPERR08G03480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.44e-37MYB_related family protein