PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G03040.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 420aa    MW: 46299.6 Da    PI: 10.4148
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G03040.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-074682341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W+++E e+++   +++G++ Wk++a+ +   Rt +++ 
  LPERR08G03040.4 46 QWSKDELERFYGSYRKYGKD-WKKVASSIR-DRTSEMVE 82
                     6*****************99.*********.***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.52E-104192IPR009057Homeodomain-like
SMARTSM007170.0074391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-44685IPR009057Homeodomain-like
PfamPF002496.4E-64686IPR001005SANT/Myb domain
CDDcd001671.75E-54789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSSTRKVRNV NKRYAKINED WQDKDATNVH KSKVRKKKLS DMLGSQWSKD ELERFYGSYR  60
KYGKDWKKVA SSIRDRTSEM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DHESNGSPKT SKKPRKRGRA KFQSVSKPSD TQHPDQLQSH PASSSYGCLS LLKKKRSGDL  180
LVGSKPRAVG KRTPRVPVAS MYQRDDKIGP TNRQAKPGGN NGDDEGADVA ALLAEVFQRG  240
GSPQVSQTPG RSGDRMFLSP VKSTDKKNAD SEMGSSKLHG FQVDADFPEG SLGSGEAETG  300
DYSKYASYLM NNEASASGKS QQKVKRTQRR RKKAAHKADD QLEDDREACS GTEEGHRTKK  360
TKDKSGVNAL GRKARWPSKK SNKRNRQLFF GDESSALDAL HTLADLSVNI LQPSSIAESG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323329VKRTQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G03040.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426910.0AK242691.1 Oryza sativa Japonica Group cDNA, clone: J090035E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631926.10.0protein ALWAYS EARLY 2 isoform X1
RefseqXP_015631927.10.0protein ALWAYS EARLY 2 isoform X2
RefseqXP_015631928.10.0protein ALWAYS EARLY 2 isoform X3
RefseqXP_015631931.10.0protein ALWAYS EARLY 3 isoform X5
RefseqXP_025879733.10.0protein ALWAYS EARLY 2 isoform X4
TrEMBLA0A0D9X4F30.0A0A0D9X4F3_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9X4F40.0A0A0D9X4F4_9ORYZ; Uncharacterized protein
STRINGLPERR08G03040.30.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.26e-77DNA binding