PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G01330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 364aa    MW: 39849.9 Da    PI: 9.6108
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G01330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.9e-49251502128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      +pGfrFhPt+eel+ +yL++kvegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgyWkatg d+ v+++
  LPERR08G01330.1  25 MPGFRFHPTEEELIEFYLRRKVEGKRFNI-ELIAFVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGYWKATGADRLVKVE 117
                      79***************************.89***************888889***************************************** PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++  +glkktLvfy g+apkg +++W+m+eyrl
  LPERR08G01330.1 118 GKGSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 150
                      *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.59724170IPR003441NAC domain
SuperFamilySSF1019413.4E-5624170IPR003441NAC domain
PfamPF023651.1E-2426150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRGDHHQDVI AARGGDDGQA NDMVMPGFRF HPTEEELIEF YLRRKVEGKR FNIELIAFVD  60
LYRYDPWDLP ALASIGDKEW FFYVPRDRKY RNGDRPNRVT PSGYWKATGA DRLVKVEGKG  120
SIGLKKTLVF YVGKAPKGLR SSWIMNEYRL PHGDADRYQK EISLCRVYKR PGIEDNFHLT  180
GTTTKSSGSK AAAAMDKKHA AAHRTNSSAA APRLAPMFAG GGGHSYAAAE GTNAITMSLS  240
AAAGGTTPPT AMFRSTAVSV ASLSSTTSTE EDGTSLFHLK QQLPASTHAL LNTNSSAMAT  300
IPIDELSRAI GSYSNNHQAN PAAHQATTNL PPSQQSPLLP FASMEKIWDW NPLLESPKVC  360
TSFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-542617019165NO APICAL MERISTEM PROTEIN
1ut4_B8e-542617019165NO APICAL MERISTEM PROTEIN
1ut7_A8e-542617019165NO APICAL MERISTEM PROTEIN
1ut7_B8e-542617019165NO APICAL MERISTEM PROTEIN
4dul_A8e-542617019165NAC domain-containing protein 19
4dul_B8e-542617019165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G01330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683930.0AK068393.1 Oryza sativa Japonica Group cDNA clone:J013151L09, full insert sequence.
GenBankAK0710520.0AK071052.1 Oryza sativa Japonica Group cDNA clone:J023075E09, full insert sequence.
GenBankAK0722750.0AK072275.1 Oryza sativa Japonica Group cDNA clone:J023012F04, full insert sequence.
GenBankKP0331890.0KP033189.1 Oryza sativa cultivar Dong Jin NAC-related protein 49 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659059.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A0D9X3S90.0A0A0D9X3S9_9ORYZ; Uncharacterized protein
STRINGLPERR08G01330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-94NAC domain containing protein 35