PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G24260.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB_related | ||||||||
Protein Properties | Length: 382aa MW: 41724.1 Da PI: 7.1635 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.5e-10 | 327 | 376 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r++W++ ++ l+++v+ +G+g+Wk I + + R+ ++k++++++ LPERR07G24260.2 327 RNKWSEIQEKTLLEGVQAHGKGNWKEIKMAYPdvfEDRSTVDLKDKFRNL 376 799*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.166 | 322 | 377 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-9 | 323 | 376 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.77E-12 | 325 | 377 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-6 | 326 | 379 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-8 | 327 | 376 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.19E-18 | 329 | 378 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MTPGDAFLIL ELVAGNRLIP NSIFTTLLIK LPSVSPHTSP RLRAGLALRA LDAALSETEA 60 PAPAAVLLHK ARAVLADPDL SPCFPEHLAS FSADDAPSAA VADLKRLVDL EWASLPPSKL 120 EIAAERIVGS EALHLWASAD PAQRSKLRLL VGESTARDIL NKLQQDASTN RLPQLDHNAP 180 KTKATYVSDC AQQTDRAGSV ELNAKADRPQ QDTTRHQQES VHGVPSRQLQ ESSIPGASIT 240 SSLLGESIRG KEEAIPARVT GQFAPENIKN HQITGSKHSL MERNSTASTF EWDGLGDSDA 300 ERPAAKRQLP SFERITKPSP TAAHKMRNKW SEIQEKTLLE GVQAHGKGNW KEIKMAYPDV 360 FEDRSTVDLK DKFRNLERHL CV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G24260.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646481.1 | 1e-175 | uncharacterized protein LOC4344404 | ||||
TrEMBL | A0A0D9X3B5 | 0.0 | A0A0D9X3B5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G24260.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 1e-09 | TRF-like 5 |