PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G24260.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 382aa    MW: 41724.1 Da    PI: 7.1635
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G24260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.5e-10327376147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r++W++  ++ l+++v+ +G+g+Wk I    +   + R+  ++k++++++
  LPERR07G24260.1 327 RNKWSEIQEKTLLEGVQAHGKGNWKEIKMAYPdvfEDRSTVDLKDKFRNL 376
                      799*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.166322377IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-9323376IPR009057Homeodomain-like
SuperFamilySSF466895.77E-12325377IPR009057Homeodomain-like
SMARTSM007171.1E-6326379IPR001005SANT/Myb domain
PfamPF002492.8E-8327376IPR001005SANT/Myb domain
CDDcd116603.19E-18329378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTPGDAFLIL ELVAGNRLIP NSIFTTLLIK LPSVSPHTSP RLRAGLALRA LDAALSETEA  60
PAPAAVLLHK ARAVLADPDL SPCFPEHLAS FSADDAPSAA VADLKRLVDL EWASLPPSKL  120
EIAAERIVGS EALHLWASAD PAQRSKLRLL VGESTARDIL NKLQQDASTN RLPQLDHNAP  180
KTKATYVSDC AQQTDRAGSV ELNAKADRPQ QDTTRHQQES VHGVPSRQLQ ESSIPGASIT  240
SSLLGESIRG KEEAIPARVT GQFAPENIKN HQITGSKHSL MERNSTASTF EWDGLGDSDA  300
ERPAAKRQLP SFERITKPSP TAAHKMRNKW SEIQEKTLLE GVQAHGKGNW KEIKMAYPDV  360
FEDRSTVDLK DKFRNLERHL CV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G24260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646481.11e-175uncharacterized protein LOC4344404
TrEMBLA0A0D9X3B50.0A0A0D9X3B5_9ORYZ; Uncharacterized protein
STRINGLPERR07G24260.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-09TRF-like 5