PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G23760.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 299aa    MW: 33173.3 Da    PI: 5.8637
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G23760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.3e-192471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  LPERR07G23760.1 24 RGPWTVEEDLLLVNYIAAHGEGRWNALARCAGLKRTGKSCRLRWLNYL 71
                     89********************************************97 PP
2Myb_DNA-binding513.4e-1677120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
  LPERR07G23760.1  77 RGNMTAEEQLMILELHGRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6681971IPR017930Myb domain
SuperFamilySSF466895.87E-3122118IPR009057Homeodomain-like
SMARTSM007173.3E-162373IPR001005SANT/Myb domain
PfamPF002494.7E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-232578IPR009057Homeodomain-like
CDDcd001674.33E-122671No hitNo description
PROSITE profilePS5129423.21272126IPR017930Myb domain
SMARTSM007179.5E-1576124IPR001005SANT/Myb domain
PfamPF002497.1E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-2379125IPR009057Homeodomain-like
CDDcd001675.61E-1179120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MMMGHQHEVS SEEETAAAGD ELRRGPWTVE EDLLLVNYIA AHGEGRWNAL ARCAGLKRTG  60
KSCRLRWLNY LRPDVRRGNM TAEEQLMILE LHGRWGNRWS KIAQHLPGRT DNEIKNYWRT  120
RVQKHAKHLN CDVNSQQFKD LMRFLWMPRL LERIQRNQSS SSSSPPSSCS DLEISCVTVD  180
AGGVACQPPP LAMAGVDTSN GCSMWRQQNQ AQMGGGVAAA TVTPAAARQD AHKVFDQMPA  240
AETAACWWSE TESTLLPGVA GFYEDEVAFL PEFDVSGGES MWGGAGGDDA SWYTQMLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-252112424126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G23760.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1034551e-146AK103455.1 Oryza sativa Japonica Group cDNA clone:J033129J22, full insert sequence.
GenBankHQ8588211e-146HQ858821.1 Oryza sativa Japonica Group isolate UT1319 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645266.11e-131transcription factor JAMYB-like
SwissprotQ10MB48e-92MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0D9X3480.0A0A0D9X348_9ORYZ; Uncharacterized protein
STRINGLPERR07G23760.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-80myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]