PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G23730.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 362aa MW: 40043.1 Da PI: 7.2528

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G23730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.2	4.7e-10	94	133	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L + ++ LPERR07G23730.1 94 KTMRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 133 7789************************855444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.0E-8	88	137	No hit	No description
SMART	SM00338	1.8E-7	90	153	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.45	92	136	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.9E-7	94	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.25E-7	94	137	No hit	No description
CDD	cd14708	1.43E-22	94	146	No hit	No description
PROSITE pattern	PS00036	0	97	112	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.7E-34	176	251	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MVVCRRRLAE ISPNRHGRSF TWRRALFKLL WSVKEIGQPV VFQIDINASS RTDTSIVVDN 60 DDKNHQFENG HSGAIMASNS SDRSDRSDKP TDQKTMRRLA QNREAARKSR LRKKAYVQQL 120 ESSKLKLAQL EQELQKARQQ GIFISSSGDQ THAMSGNGAL TFDLEYTRWL EEQNKQINEL 180 RTAVNAHASD SDLRLIVDGI MAHYDEIFKV KGVAAKADVF HILSGMWKTP AERCFLWLGG 240 FRPSELLKLL ANHLEPLTEQ QLLGLNNLQE SSQQAEDALS QGMEALQQSL AETLAGSLGS 300 SGSSGNVANY MGQMAMAMGG QPATADIASN ATNSDDPTSL SCSSCHTRLL FTVACFEFTV 360 AC

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MVVCRRRLAE ISPNRHGRSF TWRRALFKLL WSVKEIGQPV VFQIDINASS RTDTSIVVDN  60
DDKNHQFENG HSGAIMASNS SDRSDRSDKP TDQKTMRRLA QNREAARKSR LRKKAYVQQL  120
ESSKLKLAQL EQELQKARQQ GIFISSSGDQ THAMSGNGAL TFDLEYTRWL EEQNKQINEL  180
RTAVNAHASD SDLRLIVDGI MAHYDEIFKV KGVAAKADVF HILSGMWKTP AERCFLWLGG  240
FRPSELLKLL ANHLEPLTEQ QLLGLNNLQE SSQQAEDALS QGMEALQQSL AETLAGSLGS  300
SGSSGNVANY MGQMAMAMGG QPATADIASN ATNSDDPTSL SCSSCHTRLL FTVACFEFTV  360
AC

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G23730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB051295	0.0	AB051295.1 Oryza sativa OsNIF2 mRNA for bZIP transcription factor, complete cds.
GenBank	AK100440	0.0	AK100440.1 Oryza sativa Japonica Group cDNA clone:J023089F16, full insert sequence.
GenBank	CT831186	0.0	CT831186.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117D18, full insert sequence.
GenBank	HQ858807	0.0	HQ858807.1 Oryza sativa Japonica Group isolate UT1185 bZIP transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658160.1	1e-176	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_006658161.1	1e-176	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_015695229.1	1e-176	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	Q7X993	1e-177	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A0D9X342	0.0	A0A0D9X342_9ORYZ; Uncharacterized protein
STRING	LPERR07G23730.3	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-100	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]