PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G23540.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

G2-like

Protein Properties

Length: 353aa MW: 39257.4 Da PI: 7.1209

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G23540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.6e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLHerFveav+qLGG++kAtPk+i++lm+++gLtl+h+kSHLQkYRl LPERR07G23540.1 45 KPRLKWTSELHERFVEAVNQLGGPDKATPKSIMRLMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.899	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.99E-18	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-24	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MYHQQQVQSD SQHLSSRSGL PPEKQFQLHG GVDSSSGLVL STDAKPRLKW TSELHERFVE 60 AVNQLGGPDK ATPKSIMRLM GIPGLTLYHL KSHLQKYRLS KNLQSQGNAS RAKSVLGCST 120 IETEKPCEGS GSPASHLDLE TQTSSSMHIN EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ 180 GKYLQSVLQK AQEALGTIGV VESAATNASS KSLQNEHSLH HHHHQQQQQQ QQIGDGSVDS 240 CLTACDCEGS SHHSHSQRDQ QDILSIGLQQ FEPARSEGKD TSRMEQYLLF TDEPSRRRSC 300 SEIRKDGFNS SSIPMQASEL DLNIINDGGS SSSRSHSHSH RREKIDLNGS GWN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MYHQQQVQSD SQHLSSRSGL PPEKQFQLHG GVDSSSGLVL STDAKPRLKW TSELHERFVE  60
AVNQLGGPDK ATPKSIMRLM GIPGLTLYHL KSHLQKYRLS KNLQSQGNAS RAKSVLGCST  120
IETEKPCEGS GSPASHLDLE TQTSSSMHIN EALQMQIEVQ RRLHEQLEVQ RHLQLRIEAQ  180
GKYLQSVLQK AQEALGTIGV VESAATNASS KSLQNEHSLH HHHHQQQQQQ QQIGDGSVDS  240
CLTACDCEGS SHHSHSQRDQ QDILSIGLQQ FEPARSEGKD TSRMEQYLLF TDEPSRRRSC  300
SEIRKDGFNS SSIPMQASEL DLNIINDGGS SSSRSHSHSH RREKIDLNGS GWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G23540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067645	0.0	AK067645.1 Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658148.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X2
Swissprot	Q9FK47	1e-78	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A0D9X320	0.0	A0A0D9X320_9ORYZ; Uncharacterized protein
STRING	LPERR07G23540.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	4e-71	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]