PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G23530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 493aa    MW: 52292.2 Da    PI: 6.3518
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G23530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1252.4e-39119178261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+s
  LPERR07G23530.1 119 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSS 178
                      7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-31116176IPR003851Zinc finger, Dof-type
PfamPF027014.0E-32121177IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.733123177IPR003851Zinc finger, Dof-type
PROSITE patternPS013610125161IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MATPLVGSCP CSMDLAAGAA SPQPPPPPPE SHVAPSSPPP QPPEKDSCED TGDMRISEEK  60
PCTDQELDAD QTNSSSLNSS SECEDQTRSK DEMTGSESKS EAVKTDGDGS NGEKILKKPD  120
KILPCPRCNS MDTKFCYYNN YNINQPRHFC KSCQRYWTAG GSMRNIPVGA GRRKSKSSTA  180
NCRSILIPGS SLAAPAGDSP VYQVCIKGNQ TAAAVKFGPD SPLCNSMASV LKIGEQSKNA  240
KPTSTTQPRN GETQTFKASG TTSDSPRNES VNGHQNGVVG QSGVTPMHPI PCFPGPPFVY  300
PWTPAWNGIP AMAAPVCPTP TEPTNSSDNA STSNVQWSMP PVMPVPGYCG PPIPFPVIPS  360
SVWPFISPWA NGAWSSPWLG PSCGVSASSP TSSSTCSDNG SPVLGKHSRD SKPQGDDKVE  420
KSLWIPKTLR IDDPDEAAKS SIWTTLGIEP GDRGMFRPFQ SKSESREQIS GAARVLQANP  480
AALSRSQSFQ ETT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G23530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658160.0AK065816.1 Oryza sativa Japonica Group cDNA clone:J013041J16, full insert sequence.
GenBankAK1040950.0AK104095.1 Oryza sativa Japonica Group cDNA clone:001-032-E07, full insert sequence.
GenBankAY2244300.0AY224430.1 Oryza sativa (japonica cultivar-group) isolate 20587 AOBP-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658977.10.0PREDICTED: cyclic dof factor 1-like isoform X1
TrEMBLA0A0D9X3190.0A0A0D9X319_9ORYZ; Uncharacterized protein
STRINGLPERR07G23530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.25e-76cycling DOF factor 2