PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G23450.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 334aa MW: 36834.3 Da PI: 6.3755

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G23450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.4e-55	21	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee+v++yL++k++++++++ vi++v+++++ePwdLp+k+k +ekew+fF+++d+ky+tg r+nrat+sgyWkatgkdke+++ LPERR07G23450.1 21 LPPGFRFHPTDEEVVTHYLTRKAHDRRFSC-VVIADVNLNNCEPWDLPSKAKMGEKEWFFFVHKDRKYPTGMRTNRATASGYWKATGKDKEIFR 113 79************************99.78***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +g vg+kktLvfy grap+gekt Wvmheyrle LPERR07G23450.1 114 GRGVIVGMKKTLVFYLGRAPRGEKTPWVMHEYRLE 148 *******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.42E-63	18	171	IPR003441	NAC domain
PROSITE profile	PS51005	57.586	21	171	IPR003441	NAC domain
Pfam	PF02365	2.2E-28	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MSEVSVINEM SGSEEEARLD LPPGFRFHPT DEEVVTHYLT RKAHDRRFSC VVIADVNLNN 60 CEPWDLPSKA KMGEKEWFFF VHKDRKYPTG MRTNRATASG YWKATGKDKE IFRGRGVIVG 120 MKKTLVFYLG RAPRGEKTPW VMHEYRLEGK LPPNLPRSAK EEWAVCRVFN KDLAAKNPQM 180 ATAAVLVDGA GDGAFPRNDS FSFLDDFLHD SDLPDLMDPF AAAAASTSTP PPPVKTEPHQ 240 QQPPPGANSY FSFPAANNHH ISASASASAG AGLISHQHAA AVADQAIRRF CKAEAAPAPA 300 SLAAGEDTSD PFGDLLYYQD SSIPDYSHIW NEQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-53	16	171	10	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G23450.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015694971.1	1e-153	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	9e-90	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0D9X311	0.0	A0A0D9X311_9ORYZ; Uncharacterized protein
STRING	LPERR07G23450.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	2e-83	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]