PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G23240.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 908aa    MW: 100370 Da    PI: 6.7425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G23240.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.7e-19322421198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  ++
  LPERR07G23240.2 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGG 413
                      99**************************555567778***************9989999999***9.********************887.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  LPERR07G23240.2 414 KLVMGFRK 421
                      77877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-31314431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-21319422IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-24320421No hitNo description
SMARTSM010194.0E-22322422IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547322423IPR003340B3 DNA binding domain
PfamPF023624.3E-16322421IPR003340B3 DNA binding domain
PROSITE profilePS5105014.59582632IPR011124Zinc finger, CW-type
PfamPF074961.5E-11587629IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MAALVAKRCM NAACGAPAGG QEWRKGWPLR SGGFAVLCDK CGLAYEQLVF CDIFHQKESG  60
WRDCSFCGKV LSPVVPKLFP SPNNQRLFGK SDELLSGRPL ETTSVMVDAR NDDLTIISKN  120
SHPFMVKNIE AGQSSNILRQ KELENGARQI KWELPTLSIG DMGRMPFLTR SQSALEPPQY  180
TRRDENKDPT TESTTSESLS EACLNMSLGI ASNGNKLEAT STVERPMLSP TTGFAEGREL  240
TTALSPFQHA QRARHFLTRP PRVGEGAVFD PTKDMLPHLR VARPPAEGRG RNQLLPRYWP  300
RITDQELQQI SGDSNSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGRPLT  360
IQDAKGKEWH FQFRFWPNNN SRMYVLEGVT PCIQSLQLQA GDTVTFSRIE PGGKLVMGFR  420
KATNTVSLPD SQISAIANGS ILGDTLFSNT NENLAIVSGY SGFLQSIKGA ADLHTSSLYD  480
HHVNSADGDA SWLKTDKFGS RPDDGPLQFL KRGRNIGSKS RRLSMDTEEA WELKLYWDEV  540
QELLRPAPTA KPTVVMIEDY EIEEYDEPPV FAKRSIFTIR STGEHDQWIQ CDDCSKWRRL  600
PLNVIVASKW TCADNTIDSK SCSCSAPEEL TPKELHIVLQ QYEDMRRRRN SFGFKQNIPE  660
MDAASFDALT TAAVFGEVGN QGSPSVATTT KHPRHRPGCT CIVCIQPPSG KGPKHNPACT  720
CNVCMTVRRR FKTLMMRKKQ RQSEREEAET SKKVAWMNRD EPEGSSLSRS PQTLDTTRDG  780
DVTMFDKVDI NKGHIDLNFH PTAIRDEDQH NAGQPRASMV SLLEVANRPL ENYMKQNGLT  840
SLAGEQGSSS TCTNAAATVP QPTPVESEER TSNNEGRVPS AEQPESMAVD EAGDNQPDKA  900
AASDAAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-673004242126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1727738RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G23240.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013560.0AK101356.1 Oryza sativa Japonica Group cDNA clone:J033035A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646777.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0D9X2Y70.0A0A0D9X2Y7_9ORYZ; Uncharacterized protein
STRINGLPERR07G23240.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-178HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]