PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G23240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 942aa    MW: 103907 Da    PI: 6.8622
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G23240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.56e-19356455198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  ++
  LPERR07G23240.1 356 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGG 447
                      99**************************555567778***************9989999999***9.********************887.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  LPERR07G23240.1 448 KLVMGFRK 455
                      77877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-31348465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-21353456IPR015300DNA-binding pseudobarrel domain
CDDcd100174.23E-24354455No hitNo description
PfamPF023624.5E-16356455IPR003340B3 DNA binding domain
SMARTSM010194.0E-22356456IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547356457IPR003340B3 DNA binding domain
PROSITE profilePS5105014.59616666IPR011124Zinc finger, CW-type
PfamPF074961.6E-11621663IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 942 aa     Download sequence    Send to blast
MAALVAKRCM NAACGAPAGG QEWRKGWPLR SGGFAVLCDK CGLAYEQLVF CDIFHQKESG  60
WRDCSFCGKR LHCGCIASKN SFDLLDSGGV QCVTCIKNSA VQSVLSPVVP KLFPSPNNQR  120
LFGKSDELLS GRPLETTSVM VDARNDDLTI ISKNSHPFMV KNIEAGQSSN ILRQKELENG  180
ARQIKWELPT LSIGDMGRMP FLTRSQSALE PPQYTRRDEN KDPTTESTTS ESLSEACLNM  240
SLGIASNGNK LEATSTVERP MLSPTTGFAE GRELTTALSP FQHAQRARHF LTRPPRVGEG  300
AVFDPTKDML PHLRVARPPA EGRGRNQLLP RYWPRITDQE LQQISGDSNS TIVPLFEKVL  360
SASDAGRIGR LVLPKACAEA YFPPISQPEG RPLTIQDAKG KEWHFQFRFW PNNNSRMYVL  420
EGVTPCIQSL QLQAGDTVTF SRIEPGGKLV MGFRKATNTV SLPDSQISAI ANGSILGDTL  480
FSNTNENLAI VSGYSGFLQS IKGAADLHTS SLYDHHVNSA DGDASWLKTD KFGSRPDDGP  540
LQFLKRGRNI GSKSRRLSMD TEEAWELKLY WDEVQELLRP APTAKPTVVM IEDYEIEEYD  600
EPPVFAKRSI FTIRSTGEHD QWIQCDDCSK WRRLPLNVIV ASKWTCADNT IDSKSCSCSA  660
PEELTPKELH IVLQQYEDMR RRRNSFGFKQ NIPEMDAASF DALTTAAVFG EVGNQGSPSV  720
ATTTKHPRHR PGCTCIVCIQ PPSGKGPKHN PACTCNVCMT VRRRFKTLMM RKKQRQSERE  780
EAETSKKVAW MNRDEPEGSS LSRSPQTLDT TRDGDVTMFD KVDINKGHID LNFHPTAIRD  840
EDQHNAGQPR ASMVSLLEVA NRPLENYMKQ NGLTSLAGEQ GSSSTCTNAA ATVPQPTPVE  900
SEERTSNNEG RVPSAEQPES MAVDEAGDNQ PDKAAASDAA AA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-663344581125B3 domain-containing transcription repressor VAL1
5yzz_C1e-663344581125B3 domain-containing transcription repressor VAL1
5z00_C1e-663344581125B3 domain-containing transcription repressor VAL1
5z00_G1e-663344581125B3 domain-containing transcription repressor VAL1
5z00_K1e-663344581125B3 domain-containing transcription repressor VAL1
5z00_M1e-663344581125B3 domain-containing transcription repressor VAL1
6j9a_A1e-663344582126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1761772RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G23240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013560.0AK101356.1 Oryza sativa Japonica Group cDNA clone:J033035A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646777.10.0B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0D9X2Y60.0A0A0D9X2Y6_9ORYZ; Uncharacterized protein
STRINGLPERR07G23240.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-177HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]