PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G22430.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CO-like
Protein Properties Length: 372aa    MW: 38911.1 Da    PI: 5.4016
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G22430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.4e-062365541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+ ++  ++  +C+ ++  lC  C  + H        H+++p
  LPERR07G22430.1 23 QCDFCGGLPAVVYCRADSARLCLPCDRHVHAAntvstrHSRSP 65
                     7*****************************6667777787766 PP
2CCT64.43.4e-22329371345
              CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                        ++RYkeKrk+R+F+K+irYesRKa+A+ R RvKGrF+k+++
  LPERR07G22430.1 329 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRVKGRFAKSNQ 371
                      5689************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-111966IPR000315B-box-type zinc finger
PROSITE profilePS501199.8551966IPR000315B-box-type zinc finger
CDDcd000211.29E-72466No hitNo description
PROSITE profilePS5101714.991327369IPR010402CCT domain
PfamPF062031.1E-16329369IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MARADDEHQQ HKSGDGGTAA AAQCDFCGGL PAVVYCRADS ARLCLPCDRH VHAANTVSTR  60
HSRSPLCSGC RSAPAAAVAG GGGGFLCSSC CELDGVAGDG GMVTVVEGYS GCPSIGELAA  120
ILGVAVAGDK AAAAGGGDGW WVEEHSWVGV SLDDVIVPIT TCHRGLALSS PENGSSTDGE  180
VLRQLGELAK SEAAATAFVG IEMAGDDQLL SWASPEFTSG HGGDFVTEAT STTVPSCQHE  240
TWVTTDSTDP TDASKRKITP EEIQPSSSSA EPCLSSFVEI SEICPSMSYS SSEINNGIHG  300
HDPATPSLPT QADLPKKGVY DIAYPDRGTV ISRYKEKRKN RRFDKQIRYE SRKARADGRL  360
RVKGRFAKSN QA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G22430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645436.11e-148zinc finger protein CONSTANS-LIKE 13 isoform X2
TrEMBLA0A0D9X2N80.0A0A0D9X2N8_9ORYZ; Uncharacterized protein
STRINGLPERR07G22430.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-27B-box type zinc finger protein with CCT domain