PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G20030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 262aa    MW: 29505.1 Da    PI: 7.2562
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G20030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.6e-053672141
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKa 41
                     +r  ++erE+  Rd+ N+ f eL  ll ++     + + Ka
  LPERR07G20030.1 36 KRIHKSEREKLKRDKQNDLFTELGNLLEPD----RQNNGKA 72
                     68899**********************996....3444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1135104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-835104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.0713585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVPRDRVNAT AAAGAGGERI AVQRPKVNKK CEKVPKRIHK SEREKLKRDK QNDLFTELGN  60
LLEPDRQNNG KACVLGETTR ILKDLFSQVE TLRKENSALK NESHYVALER NELHDDNSML  120
RSEILELQNE LRTRMEGNPV WSHVNTRPAP RVPYPTSGVF PVQHLPHLPV TTTAAFPQQQ  180
AVVIEQHYPA TPRELQLFPE SATSEDSEPS QENGISDNVT RSQARYPTPT ATLPVNLFPV  240
LPGTQDQQCS NVTREEDHIG RS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G20030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709630.0AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
GenBankHQ8588560.0HQ858856.1 Oryza sativa Japonica Group isolate UT1619 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645391.11e-157transcription factor BHLH062-like
RefseqXP_015645393.11e-157transcription factor BHLH062-like
SwissprotQ69V101e-158BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A0D9X1S70.0A0A0D9X1S7_9ORYZ; Uncharacterized protein
STRINGLPERR07G20030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.35e-38bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]