PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G19800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 571aa MW: 62893 Da PI: 4.4932 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.3 | 2.7e-11 | 37 | 109 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT............................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg............................tWktIartmgkgRtlkqcksrwqkyl 48 +W++eEd+ l ++++G++ +W+ Ia+ + +t+ qc+ rw++yl LPERR07G19800.1 37 SWSAEEDDVLRAQIALHGTDkyefsllpvsidcfldlitvvytnfpfgSWTIIAAQFK-DKTARQCRRRWYNYL 109 6********************************************************9.**************7 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3e-13 | 115 | 158 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd+ll +a k lG++ W+ Ia+ + gRt++ +k+r+ + LPERR07G19800.1 115 KGGWSREEDLLLCEAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 158 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.6E-7 | 34 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-12 | 37 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-7 | 37 | 109 | No hit | No description |
PROSITE profile | PS50090 | 8.606 | 37 | 109 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 1.7E-11 | 38 | 125 | No hit | No description |
SuperFamily | SSF46689 | 5.47E-25 | 89 | 167 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 98 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.432 | 110 | 164 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-13 | 114 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-9 | 118 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MATGPDLSSP AAAAAAEAPL SSSAAATAVK KDRHIVSWSA EEDDVLRAQI ALHGTDKYEF 60 SLLPVSIDCF LDLITVVYTN FPFGSWTIIA AQFKDKTARQ CRRRWYNYLN SECKKGGWSR 120 EEDLLLCEAQ KVLGNKWTEI AKVVSGRTDN AVKNRFSTLC KRRAKDDELF KENGSLCSSV 180 NAKRALTQTE CVASDAAGSA PPIKQMRPCN SDFKENMTPN MRSLGEGKNT QDSRQPLAIV 240 YQNNQDNVNT MDTQNLAKTA AKQSCGEEQN CVKHEGNFLN KDDPKIATLL QRADLLCSLA 300 TKINTENTSM DEAWQQLQHH LDKKDDIDVS ESSTSEMASL LEDLDDLIVD PYENEEEDDQ 360 KLKDQTEQID VQNTENPSQT SMEVTSQMAP NNEMEDCPND KSTEDNNMES CPAKAGGGIP 420 TPENLTDAAI EDCLLHCVEY SSPVHIVIQA ITDAEIAASE NLSEVLEHNR LQCTKSAPFA 480 HTTTQAKTDA ETPASEKLSE VVKCSKPPCT EFTSPAHTVP TFLPYADDMP TPKFTASERN 540 FLLSVLELTS PGSRPDTSQQ PSCKRALLNS L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-25 | 86 | 163 | 30 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00259 | DAP | Transfer from AT2G02820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G19800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063426 | 0.0 | AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025882808.1 | 0.0 | transcription factor MYB124 isoform X1 | ||||
TrEMBL | A0A0D9X1Q2 | 0.0 | A0A0D9X1Q2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G19800.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02820.1 | 2e-72 | myb domain protein 88 |