PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G19680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 1114aa    MW: 124632 Da    PI: 6.9178
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G19680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.22.4e-56952112118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  LPERR07G19680.1  95 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 188
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  LPERR07G19680.1 189 RRTYWLLEEGFMNIVLVHYLEVK 211
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9190216IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7693211IPR005559CG-1 DNA-binding domain
PfamPF038593.8E-5096210IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.3E-5519606IPR013783Immunoglobulin-like fold
PfamPF018331.6E-4520593IPR002909IPT domain
SuperFamilySSF812962.4E-16520606IPR014756Immunoglobulin E-set
CDDcd002046.44E-14702811No hitNo description
Gene3DG3DSA:1.25.40.202.2E-17704814IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-17705813IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.741719813IPR020683Ankyrin repeat-containing domain
PfamPF127964.2E-7725814IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.484752784IPR002110Ankyrin repeat
SMARTSM002480.091752781IPR002110Ankyrin repeat
SMARTSM00248460791820IPR002110Ankyrin repeat
SMARTSM000152.3924946IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718925954IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-7926975IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0061926945IPR000048IQ motif, EF-hand binding site
SMARTSM000150.011947969IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.377948972IPR000048IQ motif, EF-hand binding site
PfamPF006122.8E-4950969IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1114 aa     Download sequence    Send to blast
MQGHYRHSML LLSLLPFSPF VTLPHVTNIP IRRRRALKSL AARIKIPQIH RAAPRFRAAR  60
RRRRRQRRRL ADRWMAEVRK YGLPNQPPDI PQILLEAQNR WLRPTEICHI LSNYKKFSIA  120
PEPPNRPASG SLFLFDRKIL RYFRKDGHNW RKKKDGKTVK EAHEKLKVGS VDVLHCYYAH  180
GEENENFQRR TYWLLEEGFM NIVLVHYLEV KGGKQSFSRS KDAEESVGLS NADSPACSNS  240
FASQSQVASQ SMDAESPISG QISEYEDAET AKFGATDNCR ASSRYDPFVE MQQPVDGVMM  300
DDMLGVSAPS AGYRGEMQTT TANSNNHFAT PYDIAGVFNE AGAGLRGASK TLHDSVRFGE  360
PYPEYPTDLM EPALYSSIAT MESNNLDDNS RLETFMSEAL YTNNLTQKEA DALTTVGITP  420
SQVENNSYAD GSIRYPLLKQ TSLDLFKIEP DGLKKFDSFS RWMSSELPEV ADLDIKSSSD  480
AFWSSTETVS VADGTSIAMN EQLDAFVVSP SLSQDQLFSI IDVSPSYACT GSRNKVLITG  540
TFLANKEHVE NCKWSCMFGD VEVPAEVLAH GSLRCYTPVH LSGRVPFYVT CSNRVACSEV  600
REFEFRDSGS RHMDASDPHI TGINEMHLHI RLEKLLSLGQ DDYEKYVMSE GNEKSEIINT  660
INSLMLDDKW SNQAVPTDEK EVSTARDQNI EKLVKEKLYC WLIHKIHDEG KGPNVLGNEG  720
QGVIHLVAAL GYDWAIRPII TAGVNVNFRD ARGWTALHWA ASCGRERTVG ALIASGAESG  780
LLTDPTPQFP SGRTAADLAS ENGHKGIAGF LAESALTSHL RALTLRESKD GNAKEICGLG  840
GTEEFAGSSS AHLPCGDSQA ESLKDSLSAV RKSTQAAARI FQAFRVESFH RKKVVEYGDD  900
DCGLSDERTL SLVSIRKPGQ NDGPSHSAAV RIQNKFRGWK GRKEFMIIRQ KIVKIQAHVR  960
GHQVRKSFRK IIWSVGIVEK IILRWRRKRR GLRGFQPVKQ LEGPSQIQQL EGPSQIQPAK  1020
EEEEVDEYDY LKDGRKQAEG RLQRALARVK SMTQYPEARE QYSRLANCVT ELQEPQAMIQ  1080
DDMQSDAAIA DGGDFMAELD ELCGDDDAPM PPIL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15664RAARRRRRR
25966RRRRRRQR
35967RRRRRRQRR
46067RRRRRQRR
56368RRQRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G19680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0D9X1N00.0A0A0D9X1N0_9ORYZ; Uncharacterized protein
STRINGLPERR07G19680.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein