PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G19470.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-other

Protein Properties

Length: 1112aa MW: 125324 Da PI: 7.9592

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G19470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.7	4.5e-14	24	76	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q+++Le ++ + +yp+ e+++e A+++gLt +qV++WF+ rR ke++ LPERR07G19470.1 24 TKKSPLQIQRLEIFYSEVQYPKSEDIAEYAASVGLTYSQVRIWFKERRRKERR 76 567899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-14	16	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.463	17	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-12	18	78	IPR009057	Homeodomain-like
SMART	SM00389	7.8E-15	19	81	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-11	24	76	IPR001356	Homeobox domain
CDD	cd00086	6.56E-9	24	67	No hit	No description
Pfam	PF15612	6.9E-5	604	635	IPR028942	WHIM1 domain
Pfam	PF15613	7.0E-11	728	798	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1112 aa Download sequence Send to blast
MAAAAAVRPM LANGLEAKRE NTGTKKSPLQ IQRLEIFYSE VQYPKSEDIA EYAASVGLTY 60 SQVRIWFKER RRKERREMES LGAHMKKQLS ARSNSSSSTI TRSSSFSRST MYCSASLRPE 120 GDHYADKGMS FIGEKHTLRS QVLFPKDYVL RKVFRKDGPP LGSEFDPLPQ SAPGHLRDTT 180 DYHLHQNQRV IKKRKIVEPT TQRSSLPCGD SDPVRKHGAG KGLMTVWHAM YSHSGKSQDG 240 SSFIDETGCL RSLRPLDDCG RKEDCHDGKL IQKKVLARKK MDKRSRPPSN RRKVPCSRVT 300 APKNHPPMEC HLSVDESQSS ELRTNQVTLV DDEELELNLL ARFPPPSVKM KQPFSTRPWE 360 SSPEMVKKLF LAVQFIYNRF GNMDVHPFTF DEFAQSFHDK VREQEFDLNF WMKSLNSLTW 420 VEILRQVLVA SGFGSKHHML NREFFNKIPL VVALQEKNQM VKYGLRPRTL KGELFALLSK 480 KGSGGLKVSE LAKSPEITDL NISSTEVDQL IYSTLSSDIT LFEKIAPSAY RLRVDPRIKG 540 KEDSGSDTED SGSVDDDSDA SGGADEFDGS HAMSFSEHGH GILRRKRKNH ENVNRCSEID 600 ESYSGERWLL GLMEGEYSDL NIDEKLDCLV ALMDVVSGAD SVPRLEEPPR VVPSIPRAQP 660 HMSGGKIKKS RRSICQSSDE CFNTSGSMYG LDSSMHEHSR SLRSHGYVGY SGRNDLSTGV 720 GHQPQAVLLG SDRRYNNYWL FLGPCRADDP GHRRVYFESS EDGHWEVIDS PQELLSLLAS 780 LDSRGIREAY LLASMKKRQT CLFEAMKKHY EDRNVVRPAI PSDMSHSETS SGDGASPKLS 840 SGDGASPTSD IDNASVPANP ADNILNASSA IAIEVGRRGD EKILKWERSQ AFDKWIWTSF 900 YSCLTAVKCG KKSFKESLVR CESCHDLYWR DEKHCRICHS TFEVSFDLEE RYAIHVATCR 960 DPEDVYDVPN HKVLPSQLQA LKAAIHAIEA RMPEAAFAGL WMKSSHKLWV KRLRRTSSLA 1020 ELLQVLVDFV GAMDEDWLYK SSSSVSFSSY LDDIVIYFQT MPQTTSAVAL WVVKLDALIT 1080 PYLERADSGR ACGKESMQTI YAIYNMTSMT AI

Sequence ? help Back to Top

Protein Sequence Length: 1112 aa Download sequence Send to blast

MAAAAAVRPM LANGLEAKRE NTGTKKSPLQ IQRLEIFYSE VQYPKSEDIA EYAASVGLTY  60
SQVRIWFKER RRKERREMES LGAHMKKQLS ARSNSSSSTI TRSSSFSRST MYCSASLRPE  120
GDHYADKGMS FIGEKHTLRS QVLFPKDYVL RKVFRKDGPP LGSEFDPLPQ SAPGHLRDTT  180
DYHLHQNQRV IKKRKIVEPT TQRSSLPCGD SDPVRKHGAG KGLMTVWHAM YSHSGKSQDG  240
SSFIDETGCL RSLRPLDDCG RKEDCHDGKL IQKKVLARKK MDKRSRPPSN RRKVPCSRVT  300
APKNHPPMEC HLSVDESQSS ELRTNQVTLV DDEELELNLL ARFPPPSVKM KQPFSTRPWE  360
SSPEMVKKLF LAVQFIYNRF GNMDVHPFTF DEFAQSFHDK VREQEFDLNF WMKSLNSLTW  420
VEILRQVLVA SGFGSKHHML NREFFNKIPL VVALQEKNQM VKYGLRPRTL KGELFALLSK  480
KGSGGLKVSE LAKSPEITDL NISSTEVDQL IYSTLSSDIT LFEKIAPSAY RLRVDPRIKG  540
KEDSGSDTED SGSVDDDSDA SGGADEFDGS HAMSFSEHGH GILRRKRKNH ENVNRCSEID  600
ESYSGERWLL GLMEGEYSDL NIDEKLDCLV ALMDVVSGAD SVPRLEEPPR VVPSIPRAQP  660
HMSGGKIKKS RRSICQSSDE CFNTSGSMYG LDSSMHEHSR SLRSHGYVGY SGRNDLSTGV  720
GHQPQAVLLG SDRRYNNYWL FLGPCRADDP GHRRVYFESS EDGHWEVIDS PQELLSLLAS  780
LDSRGIREAY LLASMKKRQT CLFEAMKKHY EDRNVVRPAI PSDMSHSETS SGDGASPKLS  840
SGDGASPTSD IDNASVPANP ADNILNASSA IAIEVGRRGD EKILKWERSQ AFDKWIWTSF  900
YSCLTAVKCG KKSFKESLVR CESCHDLYWR DEKHCRICHS TFEVSFDLEE RYAIHVATCR  960
DPEDVYDVPN HKVLPSQLQA LKAAIHAIEA RMPEAAFAGL WMKSSHKLWV KRLRRTSSLA  1020
ELLQVLVDFV GAMDEDWLYK SSSSVSFSSY LDDIVIYFQT MPQTTSAVAL WVVKLDALIT  1080
PYLERADSGR ACGKESMQTI YAIYNMTSMT AI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	76	RRRKERRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G19470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646956.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0D9X1K5	0.0	A0A0D9X1K5_9ORYZ; Uncharacterized protein
STRING	LPERR07G19470.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-138	Homeodomain-like transcriptional regulator