PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G19320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 349aa    MW: 38583.7 Da    PI: 4.7346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G19320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-18133183155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa a++  +++++g
  LPERR07G19320.1 133 THYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFATAEEAAMAYDVEARRIRG 183
                      68********.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.48E-30133193No hitNo description
PfamPF008472.5E-11133183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-31134192IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21134192IPR016177DNA-binding domain
SMARTSM003809.3E-37134197IPR001471AP2/ERF domain
PROSITE profilePS5103223.433134191IPR001471AP2/ERF domain
PRINTSPR003673.5E-11135146IPR001471AP2/ERF domain
PRINTSPR003673.5E-11157173IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSRLLPGVLA LRASLLPSQP PAAGAILRRR RRRSIIGDLY SPVRRTVHAG DLWADTGKGK  60
NGGDILKRKG SSWDFDVDVD DDDFEADFEE FEDDYDDDDD DVVDFGHDDQ ESDMNSLKLA  120
GLSSTKLSRK RKTHYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTFATAEEA AMAYDVEARR  180
IRGKKAKVNF PTAAAAASKR PRRSPAAATE KPHKKKSQSS NRASSAGSST GDDAAAVAAI  240
DDGSVKLELL SEMMTDSWLD AFELNDLERL RETSNGGFGD QIQKVEAAVV ADEFVYFDSY  300
PSYVQMGYLD QGNSYENIDA LFSGEAVLDG VNIGGLWSFD DMPIEFRSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22134191563ATERF1
3gcc_A2e-22134191563ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732RRRRRR
2127132SRKRKT
3129133KRKTH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G19320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610471e-123AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence.
GenBankAK0670601e-123AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence.
GenBankAK1093601e-123AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657959.11e-111PREDICTED: ethylene-responsive transcription factor ERF073-like
RefseqXP_015694870.11e-111PREDICTED: ethylene-responsive transcription factor ERF073-like
TrEMBLA0A0D9X1I60.0A0A0D9X1I6_9ORYZ; Uncharacterized protein
STRINGLPERR07G19320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-30ethylene-responsive element binding protein