PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G18670.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28338.8 Da    PI: 9.2627
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G18670.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.81.9e-301059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rienk+nrqvtfskRrng+lKKA+E+SvLCda+v +i+fs++gklye+ss
  LPERR07G18670.2 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDADVGLIVFSTKGKLYEFSS 59
                     8***********************************************96 PP
2K-box92.95.3e-31841721098
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +++++e++  e+  Lk++++ Lq++qR+llGe+Le+L+ keLqqLe+qLe slk+iRskKn+ll+++i+elqkkek+l+++n +L+k +
  LPERR07G18670.2  84 NTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLETLTTKELQQLEHQLEYSLKHIRSKKNQLLFDSISELQKKEKSLKNQNGELQKLM 172
                      567899*******************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.749161IPR002100Transcription factor, MADS-box
CDDcd002653.76E-42274No hitNo description
SuperFamilySSF554555.36E-33290IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2785171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.63188179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD ADVGLIVFST KGKLYEFSSH  60
SSMEGILERY QRYSFDERAV LDPNTEDQEN WGDEYGILKS KLDALQKSQR QLLGEQLETL  120
TTKELQQLEH QLEYSLKHIR SKKNQLLFDS ISELQKKEKS LKNQNGELQK LMETEKGKNN  180
ALVNTHREEQ NAAAASTSSP APVAVPDSTP TINISPYQPR GSGDSEAQQQ SPAQVGSSRL  240
PAWMLRTVSN T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-20174173MEF2 CHIMERA
6byy_B4e-20174173MEF2 CHIMERA
6byy_C4e-20174173MEF2 CHIMERA
6byy_D4e-20174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G18670.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0914580.0AF091458.1 Oryza sativa MADS box transcription factor MADS18 (MADS18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657934.11e-158PREDICTED: MADS-box transcription factor 18
SwissprotA2YNI21e-158MAD18_ORYSI; MADS-box transcription factor 18
SwissprotQ0D4T41e-158MAD18_ORYSJ; MADS-box transcription factor 18
TrEMBLA0A0D9X1A00.0A0A0D9X1A0_9ORYZ; Uncharacterized protein
STRINGLPERR07G18670.11e-169(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Chen C, et al.
    Adapting rice anther culture to gene transformation and RNA interference.
    Sci. China, C, Life Sci., 2006. 49(5): p. 414-28
    [PMID:17172048]
  3. Yoshida H, et al.
    superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.
    Plant Biotechnol. J., 2007. 5(6): p. 835-46
    [PMID:17764519]
  4. Yao SG,Ohmori S,Kimizu M,Yoshida H
    Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.
    Plant Cell Physiol., 2008. 49(5): p. 853-7
    [PMID:18378529]
  5. Seok HY, et al.
    Rice ternary MADS protein complexes containing class B MADS heterodimer.
    Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
    [PMID:20888318]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  9. Lombardo F, et al.
    The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.
    Plant Biotechnol. J., 2017. 15(1): p. 97-106
    [PMID:27336225]