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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | LPERR07G18670.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 274aa MW: 30859.7 Da PI: 8.9105 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 95.6 | 2.2e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rienk+nrqvtfskRrng+lKKA+E+SvLCda+v +i+fs++gklye+ss
LPERR07G18670.1 10 RIENKINRQVTFSKRRNGLLKKAHEISVLCDADVGLIVFSTKGKLYEFSS 59
8***********************************************96 PP
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| 2 | K-box | 92.7 | 6.4e-31 | 107 | 195 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+++++e++ e+ Lk++++ Lq++qR+llGe+Le+L+ keLqqLe+qLe slk+iRskKn+ll+++i+elqkkek+l+++n +L+k +
LPERR07G18670.1 107 NTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLETLTTKELQQLEHQLEYSLKHIRSKKNQLLFDSISELQKKEKSLKNQNGELQKLM 195
567899*******************************************************************************9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 2.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.749 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 4.04E-37 | 2 | 67 | No hit | No description |
| SuperFamily | SSF55455 | 1.44E-28 | 2 | 67 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 6.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.7E-27 | 108 | 194 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.631 | 111 | 202 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 274 aa Download sequence Send to blast |
MGRGPVQLRR IENKINRQVT FSKRRNGLLK KAHEISVLCD ADVGLIVFST KGKLYEFSSH 60 SSLKEVILDV HVDDGHQMAT LVRPNQAGIL ERYQRYSFDE RAVLDPNTED QENWGDEYGI 120 LKSKLDALQK SQRQLLGEQL ETLTTKELQQ LEHQLEYSLK HIRSKKNQLL FDSISELQKK 180 EKSLKNQNGE LQKLMETEKG KNNALVNTHR EEQNAAAAST SSPAPVAVPD STPTINISPY 240 QPRGSGDSEA QQQSPAQVGS SRLPAWMLRT VSNT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5f28_A | 1e-17 | 1 | 68 | 1 | 67 | MEF2C |
| 5f28_B | 1e-17 | 1 | 68 | 1 | 67 | MEF2C |
| 5f28_C | 1e-17 | 1 | 68 | 1 | 67 | MEF2C |
| 5f28_D | 1e-17 | 1 | 68 | 1 | 67 | MEF2C |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor. | |||||
| UniProt | Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot. {ECO:0000269|PubMed:11971906, ECO:0000269|PubMed:15299121}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | LPERR07G18670.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AF091458 | 1e-171 | AF091458.1 Oryza sativa MADS box transcription factor MADS18 (MADS18) mRNA, complete cds. | |||
| GenBank | AF139665 | 1e-171 | AF139665.1 Oryza sativa FDRMADS7 mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006657934.1 | 1e-151 | PREDICTED: MADS-box transcription factor 18 | ||||
| Swissprot | A2YNI2 | 1e-151 | MAD18_ORYSI; MADS-box transcription factor 18 | ||||
| Swissprot | Q0D4T4 | 1e-151 | MAD18_ORYSJ; MADS-box transcription factor 18 | ||||
| TrEMBL | A0A0D9X199 | 0.0 | A0A0D9X199_9ORYZ; Uncharacterized protein | ||||
| STRING | LPERR07G18670.1 | 0.0 | (Leersia perrieri) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1151 | 37 | 113 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69120.1 | 9e-56 | MIKC_MADS family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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