PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G17900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 139aa MW: 13888.5 Da PI: 5.845 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 22.6 | 2.9e-07 | 1 | 36 | 62 | 97 |
DUF260 62 vyeAearardPvyGavgvilklqqqleqlkaelall 97 +yeA r+ +Pv Gavg++++++++l+q+++e++l+ LPERR07G17900.1 1 MYEAAGRTINPVGGAVGLLSSGSWHLCQAAVETVLR 36 6*****************************998775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MYEAAGRTIN PVGGAVGLLS SGSWHLCQAA VETVLRGGGI GPMTDQLDAA SLAARRGVGC 60 STFSTAKRSA TRNTDAAAAR VGQPSCDLGL WLSPGSPPAV AAGERRAGTP SMNSEGSVTT 120 CGGAGGGERE EPELLNLFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G17900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069813 | 1e-40 | AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence. | |||
GenBank | AP005149 | 1e-40 | AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07. | |||
GenBank | AP014963 | 1e-40 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 1e-40 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647207.1 | 5e-55 | LOB domain-containing protein 37 | ||||
TrEMBL | A0A0D9X107 | 1e-93 | A0A0D9X107_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G17900.1 | 2e-94 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-12 | LOB domain-containing protein 39 |