PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR07G17890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 63aa MW: 6757.88 Da PI: 8.5162 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 50.5 | 5.8e-16 | 2 | 60 | 1 | 54 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer 54 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r LPERR07G17890.1 2 SCNGCRVLRKGCSEGCVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQR 60 6*********************9999888899***********************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.8 | 1 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-13 | 2 | 61 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 63 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEGCVLR PCLQWIEGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR 60 AGN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR07G17890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP005149 | 6e-87 | AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07. | |||
GenBank | AP014963 | 6e-87 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 6e-87 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647207.1 | 3e-37 | LOB domain-containing protein 37 | ||||
Swissprot | Q9FN11 | 6e-33 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
Swissprot | Q9SZE8 | 5e-33 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A0D9X106 | 1e-38 | A0A0D9X106_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G17890.1 | 2e-39 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-35 | LOB domain-containing protein 39 |
Publications ? help Back to Top | |||
---|---|---|---|
|