PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G17340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 26185.1 Da PI: 7.996 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.3e-19 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k LPERR07G17340.1 63 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHK 116 45589***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 119 | 2.5e-38 | 63 | 153 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrls+eqv++LE sF+ee+kLe+ rKv+la+eLgl+p+qvavWFqnrRAR+k+kqlE+++++Lk+a+d+ ++++Le+ev +L+e+l LPERR07G17340.1 63 KKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKQLEEEFNKLKHAHDSAILHKCHLENEVLRLKERLV 153 9**************************************************************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.39 | 58 | 118 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-17 | 58 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-17 | 61 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.29E-15 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 4.0E-16 | 63 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-18 | 63 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDRYGEKQQQ QLFASYVDAS LLVSGVPSSQ GERPRSRRRR RRGARCGAVG GGGDVDGSGG 60 DPKKRRLSDE QVEMLELSFR EERKLETGRK VHLASELGLD PKQVAVWFQN RRARHKSKQL 120 EEEFNKLKHA HDSAILHKCH LENEVLRLKE RLVVAEDELR RSRSAGSHTV SGEGGDMAGR 180 GGGSGACVAG SPSSSFSTGT CQPPGVGGGD GIGDDDLIYV PEYGYADNSV VEWFSLYGLI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 41 | RPRSRRRRRR |
2 | 36 | 44 | RRRRRRGAR |
3 | 110 | 118 | RRARHKSKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G17340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121889 | 0.0 | AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657887.1 | 1e-114 | PREDICTED: homeobox-leucine zipper protein HOX14 | ||||
Swissprot | Q7XI85 | 1e-110 | HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A0D9X0T4 | 1e-173 | A0A0D9X0T4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G17340.1 | 1e-174 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-40 | homeobox protein 40 |
Publications ? help Back to Top | |||
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