PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G17270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | BES1 | ||||||||
Protein Properties | Length: 312aa MW: 33028.9 Da PI: 8.6003 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 209.8 | 7.1e-65 | 19 | 157 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 g gr+ptwkErEnnkrRERrRRaiaaki++GLRa Gn++lpk++DnneVlkALcreAGwvvedDGttyrkg+kp+ sa +sp+ss q LPERR07G17270.1 19 GVGRTPTWKERENNKRRERRRRAIAAKIFTGLRATGNFNLPKHCDNNEVLKALCREAGWVVEDDGTTYRKGCKPP-------PSAGMSPCSSAQ 105 789************************************************************************.......78999******* PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvlsl 145 +s+ ss+ +spv+sy+asp+sssfpsps+ld+ ++ s+ ++llp+l+ l++ LPERR07G17270.1 106 lLSAPSSSYPSPVPSYHASPASSSFPSPSRLDNSNNPSPpSCLLPFLRGLPN 157 99*******************************9998877999999987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 5.9E-61 | 20 | 153 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MTSGSAAAAA AAAAAGAGGV GRTPTWKERE NNKRRERRRR AIAAKIFTGL RATGNFNLPK 60 HCDNNEVLKA LCREAGWVVE DDGTTYRKGC KPPPSAGMSP CSSAQLLSAP SSSYPSPVPS 120 YHASPASSSF PSPSRLDNSN NPSPPSCLLP FLRGLPNLPP LRVSSSAPVT PPLSSPTASR 180 PPKMRKPDWD VDPFGRHPFF AVSAPASPTR GRRLEHPDTI PECDESDVST VDSGRWISFQ 240 MATTAPASPT YNLVNPSGGA SNSNSMEIEG TAVGRGGPEF EFDKGRVTPW EGERIHEVAA 300 EELELTLGVG AK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 7e-27 | 22 | 94 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 7e-27 | 22 | 94 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 7e-27 | 22 | 94 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 7e-27 | 22 | 94 | 372 | 444 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid biosynthetic genes. May act as transcriptional repressor by binding the brassinosteroid-response element (5'-CGTGCG-3') in the promoter of GRAS32 (AC Q9LWU9), another positive regulator of brassinosteroid signaling (By similarity). {ECO:0000250}. | |||||
UniProt | Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid (BR) biosynthetic genes (PubMed:17699623, PubMed:19220793). May act as transcriptional repressor by binding the brassinosteroid-response element (BREE) (5'-CGTG(T/C)G-3') in the promoter of DLT (AC Q9LWU9), another positive regulator of BR signaling (PubMed:19220793). Acts as transcriptional repressor of LIC, a negative regulator of BR signaling, by binding to the BRRE element of its promoter. BZR1 and LIC play opposite roles in BR signaling and regulation of leaf bending (PubMed:22570626). {ECO:0000269|PubMed:17699623, ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22570626}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00073 | ChIP-chip | Transfer from AT1G19350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G17270.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:22570626}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106748 | 0.0 | AK106748.1 Oryza sativa Japonica Group cDNA clone:002-115-C06, full insert sequence. | |||
GenBank | AP004276 | 0.0 | AP004276.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453G03. | |||
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645123.1 | 1e-154 | protein BZR1 homolog 1 | ||||
Swissprot | B8B7S5 | 1e-155 | BZR1_ORYSI; Protein BZR1 homolog 1 | ||||
Swissprot | Q7XI96 | 1e-155 | BZR1_ORYSJ; Protein BZR1 homolog 1 | ||||
TrEMBL | A0A0D9X0S4 | 0.0 | A0A0D9X0S4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G17270.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5474 | 34 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.6 | 8e-73 | BES1 family protein |
Publications ? help Back to Top | |||
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