PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G16320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 424aa    MW: 45064.2 Da    PI: 7.3929
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G16320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.32.9e-53281561128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky +g r+nra++sgyWkatg+dk++++
  LPERR07G16320.1  28 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEVDLYKFDPWELPEKASFGEQEWYFFSPRDRKYLNGARPNRAATSGYWKATGTDKPIMA 120
                      79****************************.89***************999999**************************************** PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  ++e vg+kk Lvfy+g+ pkg kt+W+mheyrl
  LPERR07G16320.1 121 SgsSRERVGVKKALVFYRGKPPKGIKTNWIMHEYRL 156
                      9766778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-6224202IPR003441NAC domain
PROSITE profilePS5100560.91728202IPR003441NAC domain
PfamPF023651.3E-2729156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MESPDSSSGS APPRAVLRRQ QPGSAPELPP GFRFHPTDEE LVVHYLKKKA ASVPLPVTII  60
AEVDLYKFDP WELPEKASFG EQEWYFFSPR DRKYLNGARP NRAATSGYWK ATGTDKPIMA  120
SGSSRERVGV KKALVFYRGK PPKGIKTNWI MHEYRLTDTS SSANAAVATT RRPPPPPSIA  180
GGSRGAVSLR LDDWVLCRIY KKTNKAGSAG QRSMECDDSV DDALTAYAPS HAATAAGMAG  240
SGAAPAAHGG DYSSLLHHHD GHEDSFLING LLTSDEAAGL TTGASSLSQL AAAARATTMT  300
TQCSEATKEL LAPSSATPFN WFEAFLPRAN RRSRDIVGDM SLSSTAGERN DDLAEAATVA  360
IDAGGGNGGN AMPSFINPLA VQGATYQQHH AIMGASLSSD STAAAAAACN FQHPYQLSRV  420
NWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-71172053171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G16320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645677.10.0NAC domain-containing protein 10
SwissprotA2YMR00.0NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A0D9X0F20.0A0A0D9X0F2_9ORYZ; Uncharacterized protein
STRINGLPERR07G16320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75723649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-85NAC domain containing protein 25