PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G15060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 27660.6 Da PI: 5.0511 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.3e-10 | 94 | 141 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRd++N++f eL +l + + +K++K +iL A++ + +L LPERR07G15060.1 94 SKACREKLRRDKLNERFMELGAVLEPG---KTPKMDKTAILNDAIRVMTEL 141 6789**********************9...9**************998777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-14 | 82 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.42E-8 | 88 | 146 | No hit | No description |
PROSITE profile | PS50888 | 12.551 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-13 | 93 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-8 | 94 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-9 | 96 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MASPEGSTWV FDCSLMDDDL AAAGFDTAPA SGLYWPPPAP QLVPPPALPL QPVAPAAAAP 60 NACAEINGSV DCEHGKEQQT NKRPRSESGT QPSSKACREK LRRDKLNERF MELGAVLEPG 120 KTPKMDKTAI LNDAIRVMTE LRSEAQSLKE SNESLQEKIK ELKAEKNELR DEKQKLKAEK 180 ESLEQQIKFL NARPSFVPHP PVIPATAFAA AQGQAAGQKL MMPVIGYPGF PMWQFMPPSD 240 VDTTDDLKSC PPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G15060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB110196 | 0.0 | AB110196.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 23C4AG047. | |||
GenBank | AB110223 | 0.0 | AB110223.1 Oryza sativa Japonica Group OsMYC1 mRNA for bHLH-HALZ myc like protein, complete cds. | |||
GenBank | AK058889 | 0.0 | AK058889.1 Oryza sativa Japonica Group cDNA clone:001-007-D03, full insert sequence. | |||
GenBank | CT830566 | 0.0 | CT830566.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA057B18, full insert sequence. | |||
GenBank | EU837260 | 0.0 | EU837260.1 Oryza sativa Japonica Group clone KCS222A01 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647705.1 | 1e-140 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 2e-82 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A0D9WZY8 | 0.0 | A0A0D9WZY8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G15060.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2023 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-74 | bHLH family protein |