PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G13560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 309aa    MW: 33864 Da    PI: 4.0763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G13560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM323.7e-10510735127
              NAM  35 kevdiykvePwdLpk......kvka..eekewyfFskrdkkya.tgkrknratk..sgyWkatgkdkevlskkgelvglkktLvfykgrapkge 117
                      ++vd+y + P +L +      +  +  + k wyfF +  k ++ + +r++r++   s  W ++  +k+v++   ++ g  + +++ +++++ g+
  LPERR07G13560.1   5 HDVDVYLLPPDELTTkyehapA--GtdGAKVWYFFYPITKPKNgRTTRRSRTIGgdSTKWYHSEGSKKVVNGCAAVGGYYQKFTYKEKTESGGN 96 
                      799**********852444432..04467799999987765431455555554345778*999999999998999999*******977665554 PP

              NAM 118 .ktdWvmheyr 127
                       k  W+m ey 
  LPERR07G13560.1  97 vKPGWLMTEYG 107
                      499*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.9481125IPR003441NAC domain
SuperFamilySSF1019412.62E-165125IPR003441NAC domain
PfamPF023651.7E-518107IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTNPHDVDVY LLPPDELTTK YEHAPAGTDG AKVWYFFYPI TKPKNGRTTR RSRTIGGDST  60
KWYHSEGSKK VVNGCAAVGG YYQKFTYKEK TESGGNVKPG WLMTEYGVTP EHGGVDLVLC  120
KIYMSPRAPS RKRKAAEEEH VDAPPPTVQK VAHAVVEEEE TASWGGAAAV AEAEQGDASG  180
NGWDDIDMTE LFNFNGDTEA EPVRATEEDR NGFSLQSDQT ETSQTLPLPS CESAAAEEES  240
NNGLFSNIDD DVYLDALFDC EFDLGDLCFP EPSSSSNSMP EPVPTPASIE PSEEQSEFSI  300
EDLYIEGIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G13560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WZF30.0A0A0D9WZF3_9ORYZ; Uncharacterized protein
STRINGLPERR07G13560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62801545