PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G13460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 26767 Da PI: 4.6202 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 56.4 | 1.1e-17 | 5 | 144 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvka......eekewyfFskrdkkya.tgkrknratk..sgy 82 l pG+ F P+++ l+++yL++k++g++ l ++ ++++vd+y + P +L +k+++ + k wyfF++ k ++ + r++r++ + LPERR07G13460.1 5 LLPGLSFLPSESVLLDRYLQPKIAGSSlddLGCKAIMHDVDVYLLPPDELTAKYEHapagsdGAKVWYFFCPITKPKNgRTARRSRTICgdIRR 98 579************************655555568**************8533333444446779*****98775531344555543322346 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkge.ktdWvmheyr 127 W ++ +k+v++ ++ g + +++ +++++ g+ k W+m ey LPERR07G13460.1 99 WYHSEGSKKVVNGCAAVGGYYQKFTYKEKTESGGNvKPGWLMTEYG 144 9988888999998999999*******977665554499*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-25 | 3 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.042 | 5 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-12 | 7 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAPPLLPGLS FLPSESVLLD RYLQPKIAGS SLDDLGCKAI MHDVDVYLLP PDELTAKYEH 60 APAGSDGAKV WYFFCPITKP KNGRTARRSR TICGDIRRWY HSEGSKKVVN GCAAVGGYYQ 120 KFTYKEKTES GGNVKPGWLM TEYGVTPEHG GVDLVLCKIY MSPRAPSRKR KAAEEEHVDA 180 PPPTVQRVLQ AIVEEEEETA SCGDAPTVVE AAEEQGDASG NGWDDIDMTE LFNGDTEDEP 240 VRSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G13460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9WZD8 | 0.0 | A0A0D9WZD8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G13460.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6280 | 15 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 2e-08 | NAC domain containing protein 64 |