PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G13200.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 359aa MW: 34444.2 Da PI: 8.0755

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G13200.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.7e-39	40	99	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+ LPERR07G13200.1 40 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 99 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	36	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	42	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MAGAAGGGGA ATAAPAARSG GGGGGTAAAA AGAGAPDPRA EALRCPRCDS ANTKFCYYNN 60 YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRSRS GAAAAGAAAA AAGRGGAVSA 120 AGGGGTSPGV AMAQQQHGGA SVMGLGGGGA TSLASLLLGT GGGGGDQLGL FQAAMQSVDV 180 AAAYEMQQQQ QSQVDHLLGL GYGQIQAAKS AAPSWMHDAA GVGGLLDGFY APLLSGSIVP 240 GLEELHVKAE AAAGGAGEHH HQHKTSAAGA AAGGEQQGWD MPTPSPSSNV EASIIASDAL 300 MAAAAAASMN PGAVGGGVST APTTAQSLLY SWGNGGGIGA AAAAWPDLAN CGSSIATLF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MAGAAGGGGA ATAAPAARSG GGGGGTAAAA AGAGAPDPRA EALRCPRCDS ANTKFCYYNN  60
YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRSRS GAAAAGAAAA AAGRGGAVSA  120
AGGGGTSPGV AMAQQQHGGA SVMGLGGGGA TSLASLLLGT GGGGGDQLGL FQAAMQSVDV  180
AAAYEMQQQQ QSQVDHLLGL GYGQIQAAKS AAPSWMHDAA GVGGLLDGFY APLLSGSIVP  240
GLEELHVKAE AAAGGAGEHH HQHKTSAAGA AAGGEQQGWD MPTPSPSSNV EASIIASDAL  300
MAAAAAASMN PGAVGGGVST APTTAQSLLY SWGNGGGIGA AAAAWPDLAN CGSSIATLF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G13200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159095.1	1e-106	dof zinc finger protein DOF5.8-like
TrEMBL	A0A0D9WZA8	0.0	A0A0D9WZA8_9ORYZ; Uncharacterized protein
STRING	LPERR07G13200.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	6e-34	TARGET OF MONOPTEROS 6