PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G13070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | SBP | ||||||||
Protein Properties | Length: 227aa MW: 23162.7 Da PI: 10.3703 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 124.9 | 3.5e-39 | 119 | 195 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+e C +dls+a +y+rrhkvC++hsk pvvlv+gl+qrfCqqCsrfhel fD+ k+sCr+rLa+hnerrrk + LPERR07G13070.1 119 RCQAETCGVDLSDASRYYRRHKVCQHHSKEPVVLVAGLRQRFCQQCSRFHELAAFDDIKKSCRDRLAGHNERRRKGS 195 6*************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.7E-32 | 113 | 181 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.59 | 117 | 194 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.05E-36 | 118 | 197 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-30 | 120 | 193 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MDRKDKDHRK EKARKASVSS VAASMAALAA AAAAGDMLPR QEARPPSPME EDKNPRLMVG 60 SASLPPPPPA AAGGAASSPS SPVAGGSGGG GGGGAARRGA GGRAAGGGVA AGGGGGGPRC 120 QAETCGVDLS DASRYYRRHK VCQHHSKEPV VLVAGLRQRF CQQCSRFHEL AAFDDIKKSC 180 RDRLAGHNER RRKGSADANG SGGSGGNCRD TDHDGRSHPG NPPYHIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 111 | 193 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 107 | GGRAAGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G13070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645415.1 | 3e-50 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q6Z461 | 3e-51 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A0D9WZ86 | 1e-158 | A0A0D9WZ86_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G13070.1 | 1e-159 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 9e-32 | squamosa promoter binding protein-like 3 |