PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G12760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 416aa MW: 43471.8 Da PI: 6.9793 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.3e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+++ ++G +W++++++ g+ R++k+c++rw +yl LPERR07G12760.1 13 RGLWSPEEDEKLVHYISEHGHSCWSSVPKHAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.1e-16 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ LPERR07G12760.1 66 RGTFSEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.069 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-28 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-12 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.597 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-15 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGHHCCSKQK VKRGLWSPEE DEKLVHYISE HGHSCWSSVP KHAGLQRCGK SCRLRWINYL 60 RPDLKRGTFS EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPKTHNLLPA SKTLLHGVPA ANPSGNNNSN NNLAHFHSNG GAAAATAATT PFTISSPSKA 180 AAAFEVAPPA MYDVVVPNHH ATGGMMMGHD HNHHVAAAAA AAMARAGYHP YAENGNGGGV 240 LMSFRDQNGG GVVHAAASMD FMNGSSSSSS MEHHGGGGGM AANGNGFSAS MAAAFMDEEA 300 AMWATAVETP VSMAGLGGMD LPHQHQQQQL LVQESAAVVG PRPPTATLMM HGGGGAGAMV 360 DKGVVEMVDV SSEVYGGGAG AGAGATAFDL DLMVESCGMF GAGGGNAGIE QLQWDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-33 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G12760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645809.1 | 1e-175 | myb-related protein Hv33 | ||||
TrEMBL | A0A0D9WZ41 | 0.0 | A0A0D9WZ41_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G12760.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9751 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-80 | myb domain protein 67 |