PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G12700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 181aa MW: 19496.2 Da PI: 9.5076 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.4 | 4.4e-13 | 10 | 134 | 6 | 127 |
NAM 6 rFhPtdeelvveyLkkkvegkklel..eevikev.diykvePwdLpk.....kvka..eekewyfFskrdkkyatgkrknratksgy..Wkatg 87 F Ptd e++++ L++k++g ++ ++ ++++ d++++ P +L + + ++k wyfFs+r + g r +r+ +g W g LPERR07G12700.1 10 PFLPTDGEILHCLLRPKIAGAYIDSrfTHLVHDIhDVFSLPPDQLAAshahaP--GaqGDKAWYFFSTRIGS---GGRGRRVGGDGSkrWCPVG 98 599******************95552144599999**********84344442..144788*******9775...66777766655444***** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++ke+ + g + L + +++a+ W+m ey LPERR07G12700.1 99 SKKELAG-G---GGYCRRLRYREKTAKGVFAPGWMMLEYG 134 ****998.3...478889**998888887899*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.882 | 5 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-9 | 10 | 134 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-22 | 10 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MDPAEEFPVP FLPTDGEILH CLLRPKIAGA YIDSRFTHLV HDIHDVFSLP PDQLAASHAH 60 APGAQGDKAW YFFSTRIGSG GRGRRVGGDG SKRWCPVGSK KELAGGGGYC RRLRYREKTA 120 KGVFAPGWMM LEYGVAQEHA VADLVLCKIF QSPHSGSGSP SSSKSTSASA GRKRKADALL 180 C |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G12700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658578.1 | 2e-57 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A0D9WZ29 | 1e-130 | A0A0D9WZ29_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G12700.1 | 1e-131 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15395 | 10 | 17 |