PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G12620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 37650.7 Da PI: 8.1679 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 25.9 | 2.7e-08 | 14 | 106 | 7 | 92 |
NAM 7 FhPtdeelvveyLkkkvegkklel..eevikev.diykvePwdLpk...kvka....eekewyfFskrdkkyatgkrknratksgy..Wkatgk 88 F Pt+ el+++ L++k++g ++ ++ ++++ d++ + P +L + + a ++k wyfFs+r + + + + +g+ W g+ LPERR07G12620.1 14 FLPTEGELLHCLLRPKIAGAYIDSrfTHLVHDIhDVFALTPDHLAAmhtH--ApgarGDKVWYFFSTRIGSGGR---GRMVGGDGTkrWFPVGS 102 99******************95552144599999**********842331..25555788******99776544...33333333333777777 PP NAM 89 dkev 92 +ke+ LPERR07G12620.1 103 KKEL 106 7765 PP | |||||||
2 | NAM | 38.8 | 2.9e-12 | 160 | 283 | 7 | 127 |
NAM 7 FhPtdeelvveyLkkkvegkk..leleevikev.diykvePwdLpk...kvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 F Ptd el+++ L++k++g ++++ +++v d++ + P +L + + a ++k wyfFs+r + +g+r s +W + g++k LPERR07G12620.1 160 FLPTDGELLHCLLRPKIAGAYidSRFTDLVHDVdDVFALPPDQLAAahsH--ApgarGDKAWYFFSTRIGSGGHGRRVGGD-GSKRWCSVGSKK 250 99******************944444567999999*********843441..24455788*******99877666555553.4567******** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 e+ + g + + + +++++ + W+m ey LPERR07G12620.1 251 ELAG-G---GGYCRRFRYREKTEKGVVAPGWMMLEYG 283 *998.3...477888999887777778999******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 13.511 | 8 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-14 | 12 | 139 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-5 | 13 | 132 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.539 | 154 | 306 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-21 | 158 | 306 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-8 | 160 | 283 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDPSAAAEEF SIPFLPTEGE LLHCLLRPKI AGAYIDSRFT HLVHDIHDVF ALTPDHLAAM 60 HTHAPGARGD KVWYFFSTRI GSGGRGRMVG GDGTKRWFPV GSKKELAGWG GYCRRLRRKG 120 VVAPGWMMLE YGVVAQEHAG SEDGISELTM ASETEFPIPF LPTDGELLHC LLRPKIAGAY 180 IDSRFTDLVH DVDDVFALPP DQLAAAHSHA PGARGDKAWY FFSTRIGSGG HGRRVGGDGS 240 KRWCSVGSKK ELAGGGGYCR RFRYREKTEK GVVAPGWMML EYGVVAQEHA VGDGIAELVL 300 CKIFRSPRWH SGSPSSSTSA SASVGRKRKA GEFSGREMPD AAFSED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G12620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658578.1 | 5e-58 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A0D9WZ20 | 0.0 | A0A0D9WZ20_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G12620.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15395 | 10 | 17 |