PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G12300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 194aa MW: 20828.7 Da PI: 9.5298 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.5 | 4.3e-13 | 14 | 136 | 7 | 127 |
NAM 7 FhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpk...kvka....eekewyfFskrdkkyatgkrknratksgy..Wkatgkd 89 F Pt+ e++++ L++k++g ++ ++ ++e+d++++ P +L + + a ++k wyfF++r + g r +r+ +g+ W + g++ LPERR07G12300.1 14 FLPTEGEILHCLLRPKIAGAYIDSrfTHLVHEADVFSLPPDQLAAmhaH--ApgarGDKAWYFFTTRIGS---GGRGRRVGGDGTkrWCSVGSK 102 99******************9555214459*************843331..25555788******99775...66777776666555******* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ke+ + g + + + +++a+ + W+m ey LPERR07G12300.1 103 KELAG-G---GGYCRRFRYREKTANGVVAPGWMMLEYG 136 **998.3...47888999999999999999*******6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.341 | 8 | 159 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-22 | 13 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-8 | 14 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MDPAAAAEEF PIPFLPTEGE ILHCLLRPKI AGAYIDSRFT HLVHEADVFS LPPDQLAAMH 60 AHAPGARGDK AWYFFTTRIG SGGRGRRVGG DGTKRWCSVG SKKELAGGGG YCRRFRYREK 120 TANGVVAPGW MMLEYGVVSQ EHAVGDGVAD LVLCRFFRSP RAARSDSKSP SSSASASASV 180 GRKRKAEALL CSDG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G12300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658578.1 | 1e-56 | PREDICTED: NAC domain-containing protein 72-like | ||||
TrEMBL | A0A0D9WYX9 | 1e-139 | A0A0D9WYX9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G12300.1 | 1e-140 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15395 | 10 | 17 |