PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G10540.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 425aa MW: 46172 Da PI: 4.8892 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.3 | 1.5e-32 | 247 | 301 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHerFv+av+ LGGsekAtPk +l+lmk + Lt++hvkSHLQkYR+ LPERR07G10540.2 247 KTRMRWTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYRT 301 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.059 | 244 | 304 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 244 | 303 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-17 | 246 | 301 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-24 | 247 | 301 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.1E-10 | 249 | 300 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.1E-21 | 334 | 378 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MERVSTNQLY SSGIPVSVPS PLPAIPATLD ESFPRLPDGQ NVLRDRELSS TTLPPHQNQS 60 TVAPLHGQFQ SSTGSVGPLR SSQAIRFSSV PNHEQYTNAN TYNSQPPSTG SSSALNYGPQ 120 YGGFEPTLSD FPREAGPTWC PDPVDGLLGY TDDVSGGNNM TDNSSIAATD ELAKQSEWWN 180 DFMNYDWKDV VDNTACPETQ PQVGPPAQSS IVVHQSAAQQ SVSSQSGEPS AVAIPSPTAA 240 GNTSNSKTRM RWTPELHERF VDAVNLLGGS EKATPKGVLK LMKADNLTIY HVKSHLQKYR 300 TARYRPELSE GSSEKKAASK EDLPSIDLKG GNLDLTEALR LQLELQKRLH EQLEIQRSLQ 360 LRIEEQGKCL QMMLEQQCIP GTDKAVDASA EGSKRSPDLP ESSTAKDVPE SNQNGIAKQT 420 ESGDR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-29 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-29 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-29 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-29 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-29 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-29 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-29 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-29 | 247 | 305 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis. PHR2 binding to DNA is repressed redundantly by SPX1, SPX2 and SPX4 in a PI-dependent manner. {ECO:0000250|UniProtKB:Q6Z156}. | |||||
UniProt | Transcription factor involved in phosphate starvation signaling (PubMed:18263782, PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:25657119, PubMed:26082401). Functionally redundant with PHR1 and PHR3 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). Involved in both systematic and local Pi-signaling pathways (PubMed:19704822). Regulates several Pi transporters (PubMed:18263782). Regulates the expression of PT2 (PubMed:20149131). Directly up-regulates SPX1 and SPX2 expression, but PHR2 binding to DNA is repressed redundantly by SPX1 and SPX2 in a PI-dependent manner (PubMed:25271318). The DNA-binding activity is also repressed by SPX4 (PubMed:24692424). Involved in root growth under Pi deprivation (PubMed:18263782). {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:19704822, ECO:0000269|PubMed:20149131, ECO:0000269|PubMed:24692424, ECO:0000269|PubMed:25271318, ECO:0000269|PubMed:25657119, ECO:0000269|PubMed:26082401}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G10540.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by Pi starvation. {ECO:0000269|PubMed:18263782, ECO:0000269|PubMed:26082401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100065 | 0.0 | AK100065.1 Oryza sativa Japonica Group cDNA clone:J013160O05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657651.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_015695298.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | B8B5N8 | 0.0 | PHR2_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
Swissprot | Q6Z156 | 0.0 | PHR2_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 2 | ||||
TrEMBL | A0A0D9WYA9 | 0.0 | A0A0D9WYA9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G10540.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 2e-62 | phosphate starvation response 1 |