PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G10310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HB-other | ||||||||
Protein Properties | Length: 203aa MW: 23294.3 Da PI: 8.1097 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.7e-19 | 30 | 80 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ q+++Le++Fekn+y+ +++reeLAkklg++erq+k+WF NrR++ k LPERR07G10310.1 30 RHSYVQIKQLESVFEKNNYVGQKQREELAKKLGMEERQIKFWFRNRRTRNK 80 46778********************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-20 | 13 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.71E-18 | 18 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-15 | 23 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.68E-15 | 26 | 80 | No hit | No description |
Pfam | PF00046 | 2.3E-16 | 30 | 80 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.7E-6 | 53 | 62 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 62 | 78 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEETGDAARD DSDYSGEGQD EAASYKRTKR HSYVQIKQLE SVFEKNNYVG QKQREELAKK 60 LGMEERQIKF WFRNRRTRNK EENKTLLAEN KELKEAICDQ ICLKCDSPIV CAAKTTQMQY 120 LRFQNMRLHC ELQRATAVLI QVTQDANACP PKVFPLTRDL AVAQISSPTI NNQNSPAINY 180 PTPLELENWI SPNSVNSISP SKH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 75 | RQIKFWFRNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G10310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9WY80 | 1e-151 | A0A0D9WY80_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G10310.1 | 1e-151 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14930 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 7e-18 | HD-ZIP family protein |