PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G10060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 189aa MW: 21598.5 Da PI: 9.775 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.6e-14 | 20 | 61 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eEd l ++ k+ G ++W+++ar m+ +R++ c++rw+ LPERR07G10060.1 20 AWTAEEDATLQRLAKENGFRHWSRVARSMP-RRSARACRDRWR 61 7*****************************.***********8 PP | |||||||
2 | Myb_DNA-binding | 22.1 | 3.6e-07 | 72 | 115 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l++++ +lG + Wk I r + gRt k rw+ ++ LPERR07G10060.1 72 PFTARDDDELLRLHYRLGDR-WKDIGRAVY-GRTSRVMKRRWRELR 115 79****************99.********9.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.837 | 13 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-9 | 17 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.49E-22 | 18 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.3E-17 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.26E-12 | 20 | 61 | No hit | No description |
Pfam | PF13921 | 7.9E-13 | 21 | 80 | No hit | No description |
PROSITE profile | PS50090 | 7.131 | 65 | 115 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0019 | 69 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.18E-4 | 72 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-8 | 74 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MATQPAARTR CVVRIRVPPA WTAEEDATLQ RLAKENGFRH WSRVARSMPR RSARACRDRW 60 RHDLARDVYD RPFTARDDDE LLRLHYRLGD RWKDIGRAVY GRTSRVMKRR WRELRRSGFP 120 ASAAGCRVEQ HAVDMESDQE EKAESVTREL ERPVADVLAS SFASCSIASD CAMDPFAGSL 180 ALGFACMAV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 3e-15 | 22 | 111 | 6 | 95 | MYB3 |
3zqc_D | 3e-15 | 22 | 111 | 6 | 95 | MYB3 |
3zqc_G | 3e-15 | 22 | 111 | 6 | 95 | MYB3 |
3zqc_J | 3e-15 | 22 | 111 | 6 | 95 | MYB3 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G10060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645964.1 | 2e-92 | transcription factor MYB73 | ||||
TrEMBL | A0A0D9WY47 | 1e-133 | A0A0D9WY47_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G10060.1 | 1e-134 | (Leersia perrieri) | ||||
STRING | LPERR07G10290.1 | 1e-134 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 3e-17 | myb domain protein 73 |