PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G10050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 285aa MW: 30857.4 Da PI: 4.189 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.2 | 4.6e-25 | 12 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 l pGf+F+P+d++lv+ yL ++++g++l+l+ vi e+d +++ Pw+L +++ + +e +fF++++ k+ +gkr++r + g+W+ + LPERR07G10050.1 12 LLPGFKFNPSDDDLVTSYLLHRLQGNPLPLHGVILEADPLTTPPWKLLAEH-GLGDEGFFFAEARAKNGKGKRQKRtVEGGGFWQGQRMCGGGS 104 579***************************99***************7443.445789******************555599***887766555 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + k +L f+ ++ +kg ++ Wvmhe+++ LPERR07G10050.1 105 V--EGISWSKYMLSFF-AEGEKG-SSGWVMHEFAV 135 5..557899*******.445554.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-29 | 10 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.023 | 12 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-16 | 14 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MAAGGGADGD GLLPGFKFNP SDDDLVTSYL LHRLQGNPLP LHGVILEADP LTTPPWKLLA 60 EHGLGDEGFF FAEARAKNGK GKRQKRTVEG GGFWQGQRMC GGGSVEGISW SKYMLSFFAE 120 GEKGSSGWVM HEFAVTSPPE LASSPVRLYR VRFSGHGRKR RREPESEEAS TIAPKRTRTE 180 DALLQELVPP ADEGCSSVMD ESSMVFGDLP ELIDLSAEEA DAAGTCLSQE EIQNKSLSGI 240 VDGEAPALCD FDIPESLDEV FDCIDFSFLD TIDFSMDGLF DLPAD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 161 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G10050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638590.1 | 6e-88 | uncharacterized protein LOC107275325 | ||||
Refseq | XP_025882797.1 | 5e-89 | NAC transcription factor 32 | ||||
TrEMBL | A0A0D9WY46 | 0.0 | A0A0D9WY46_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G10050.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 5e-14 | NAC domain containing protein 47 |