PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G06960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Dof | ||||||||
Protein Properties | Length: 273aa MW: 28501 Da PI: 10.2658 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.7 | 2.5e-38 | 29 | 87 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +e lkcprC+stntkfCy+nnysl qPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+ LPERR07G06960.1 29 PEPGLKCPRCESTNTKFCYFNNYSLIQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKR 87 56789****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-31 | 25 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-32 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.301 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGNSSSSSSA AARPASMAER ARMAKIPQPE PGLKCPRCES TNTKFCYFNN YSLIQPRHFC 60 KACRRYWTRG GALRNVPVGG GCRRNKRGGK SSKKPSSSSS GASPAIGVMA PEQQMQLLPF 120 GSSRLGFPEL SSLHAAAAVD YHVGSFERQQ FPFLRRPNTG VDHQVQPPPP LISARISSYR 180 FGGDGDMPAA GGSAGLITQM ASVKMDDIDN NNSALSAAAS PTSSSAREFL GLRGPSLQFW 240 GTGGGGEGGG AAPGGGGWSD LPAFDLSTSG NIL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G06960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068542 | 4e-88 | AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence. | |||
GenBank | AP004303 | 4e-88 | AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12. | |||
GenBank | AP014963 | 4e-88 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645541.1 | 2e-94 | dof zinc finger protein DOF5.1 isoform X3 | ||||
TrEMBL | A0A0D9WX21 | 0.0 | A0A0D9WX21_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G06960.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4893 | 29 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 2e-36 | DNA binding with one finger 2.4 |