PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G06960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 273aa    MW: 28501 Da    PI: 10.2658
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G06960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.5e-382987260
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                     +e  lkcprC+stntkfCy+nnysl qPr+fCkaCrryWt+GGalrnvPvGgg+r+nk+
  LPERR07G06960.1 29 PEPGLKCPRCESTNTKFCYFNNYSLIQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKR 87
                     56789****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-312587IPR003851Zinc finger, Dof-type
PfamPF027013.7E-323387IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3013387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGNSSSSSSA AARPASMAER ARMAKIPQPE PGLKCPRCES TNTKFCYFNN YSLIQPRHFC  60
KACRRYWTRG GALRNVPVGG GCRRNKRGGK SSKKPSSSSS GASPAIGVMA PEQQMQLLPF  120
GSSRLGFPEL SSLHAAAAVD YHVGSFERQQ FPFLRRPNTG VDHQVQPPPP LISARISSYR  180
FGGDGDMPAA GGSAGLITQM ASVKMDDIDN NNSALSAAAS PTSSSAREFL GLRGPSLQFW  240
GTGGGGEGGG AAPGGGGWSD LPAFDLSTSG NIL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G06960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685424e-88AK068542.1 Oryza sativa Japonica Group cDNA clone:J013155H18, full insert sequence.
GenBankAP0043034e-88AP004303.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0407H12.
GenBankAP0149634e-88AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645541.12e-94dof zinc finger protein DOF5.1 isoform X3
TrEMBLA0A0D9WX210.0A0A0D9WX21_9ORYZ; Uncharacterized protein
STRINGLPERR07G06960.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48932961
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-36DNA binding with one finger 2.4