PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G06890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 403aa MW: 44531.5 Da PI: 6.8908 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.1 | 4.1e-18 | 98 | 144 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT e+de l + v ++G++ W+ Ia+ ++ gRt+kqc++rw ++l LPERR07G06890.1 98 KRPWTREDDEVLRKMVIRHGNRKWAEIAKNLP-GRTGKQCRERWINHL 144 579*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 55.8 | 1.1e-17 | 150 | 192 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT eEd++l++a+k +G W+ Iar+++ gR+++++k++w+ LPERR07G06890.1 150 KDVWTREEDKILIEAHKNYGES-WSVIARYLP-GRSGNNVKNHWY 192 578*****************88.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.917 | 93 | 148 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-30 | 95 | 191 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-17 | 97 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-16 | 98 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.73E-17 | 100 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-24 | 100 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 149 | 197 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 149 | 197 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.486 | 149 | 199 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.8E-15 | 150 | 192 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.56E-13 | 153 | 192 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MTATGNSFLN YEFLMTANSV PQRHFTSSTN VGAPITVEVP NLGCPGDRTS MAPSSFVMSE 60 WGQAAASYET LASNQVGTAM LSQQTQARGS NDKPPLIKRP WTREDDEVLR KMVIRHGNRK 120 WAEIAKNLPG RTGKQCRERW INHLHPNIKK DVWTREEDKI LIEAHKNYGE SWSVIARYLP 180 GRSGNNVKNH WYGTARRLNS KRQVKQTSLL EDYIRSKPSQ SIKTTPPMSG PEPFDNLEYN 240 TGLIGAGSTP AIQAPSFSTP PELMAYTSVL NSATIPSQLE SLDIFRTPVP TTLPLNTDHE 300 HHGDKYDLPS AAEGNLHFGG SHHIVGCQGS QPPYLGLYPS SSLAGSHVDG GTVAYDLQSF 360 NQANEGRHYY GEADPSSVGF GVMNDNDIIG QFMDDSDQSR WIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-37 | 94 | 197 | 3 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G06890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645903.1 | 1e-112 | transcription factor MYB119 | ||||
TrEMBL | A0A0D9WX14 | 0.0 | A0A0D9WX14_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G06890.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 9e-43 | myb domain protein 98 |