PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G06440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 297aa    MW: 32733.8 Da    PI: 5.0976
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G06440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.44.8e-52301551128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelv++yL+++++g++ ++  +i+evd+y+++PwdLp+++  +++ewyfF++rd+ky++g+r+nra+ sgyWkatg dk+v++
  LPERR07G06440.1  30 LPPGFRFHPTDEELVSHYLCARAAGRSPPV-AIIAEVDLYRHDPWDLPSMALFGRREWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPVVC 122
                      79*************************999.88***************76667899************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g++ g+kk Lvfy+g+ p+g+kt+W+mheyrl
  LPERR07G06440.1 123 -GGRTAGIKKALVFYHGKPPRGVKTEWIMHEYRL 155
                      .99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6326186IPR003441NAC domain
PROSITE profilePS5100558.77430186IPR003441NAC domain
PfamPF023651.1E-2631155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTSSSPSPSP SPAAAAAGRR ARDAEAELNL PPGFRFHPTD EELVSHYLCA RAAGRSPPVA  60
IIAEVDLYRH DPWDLPSMAL FGRREWYFFT PRDRKYPNGS RPNRAAGSGY WKATGADKPV  120
VCGGRTAGIK KALVFYHGKP PRGVKTEWIM HEYRLAADRG GNSTSATKKS GTLRLDDWVL  180
CRLYNKKNEW EKMQIKEEEV AMAAPAMSHT PESEIDNNDD DQFPELDSLP AFSDGDMVVT  240
PKEEAQDDDW LMGMSLDDLQ GLGSLLQGDE IFSSSMIAPP AATMAAAKTE QWGVPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-94191924174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G06440.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694929.11e-140PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 67-like
SwissprotQ7EZT11e-136NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A0D9WWW50.0A0A0D9WWW5_9ORYZ; Uncharacterized protein
STRINGLPERR07G06440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.17e-80NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]