PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G06330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 393aa MW: 43224.1 Da PI: 7.423 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.1e-18 | 90 | 135 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT eEde l + v q+G++ W+ Ia+ ++ gR +kqc++rw ++l LPERR07G06330.1 90 GPWTREEDEVLRNMVIQHGNRKWAEIAKSLP-GRIGKQCRERWINHL 135 89*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT eEd++l++a+k +G+ W++I+r++ gR+++++k++w+ LPERR07G06330.1 141 KDVWTGEEDKILIEAHKIFGKS-WSAISRYLL-GRSENNIKNHWN 183 578*****************88.********9.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.424 | 84 | 139 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.91E-29 | 86 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 88 | 137 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 90 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-16 | 90 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.18E-16 | 91 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-19 | 139 | 188 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.376 | 140 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-14 | 140 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-13 | 141 | 183 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.42E-12 | 144 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MEGDLTAATG NSFVNHEFLM TANNVSQRHF TSSTNAGDRT GMAPSSFVMS EWGQAAASYG 60 TVASNLVGAA MVCQQTQARG SNDKPPLING PWTREEDEVL RNMVIQHGNR KWAEIAKSLP 120 GRIGKQCRER WINHLHPDIK KDVWTGEEDK ILIEAHKIFG KSWSAISRYL LGRSENNIKN 180 HWNATARRLK SKRRLRQTSL LEDYIRSKPS ETIKTTPPLS GPAPFDNLEY NTGLISAGST 240 PAIQAPSFST PPELVAYTGV LNSATIPSQL ETLDLFRTPV LPKLSLNTDH EHRGDRYDLP 300 FSEGNIHFSG SYHSGGCQGS QPSYQSLYPP SSLAGSHVDG GRVAFDLQSS NQANAGCHYY 360 GEEGPNSFGK GVMNNNDIVG QFMNDSDQAK WIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-39 | 85 | 188 | 3 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G06330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645903.1 | 1e-106 | transcription factor MYB119 | ||||
TrEMBL | A0A0D9WWV0 | 0.0 | A0A0D9WWV0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G06330.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 3e-46 | myb domain protein 98 |