PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G05500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 535aa MW: 58203.5 Da PI: 4.6834 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 79.2 | 9.1e-25 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevl 93 l pGf+F+P+d +lv +yL ++++g++l+l+ +i e+d +++ Pw+L ++ +++ +e +fF+ ++ k+ +g+r++r + g+W+ + +v LPERR07G05500.1 10 LSPGFKFDPSDGDLVGRYLLARIQGNPLPLDGIILEADPLSSPPWRLLAE-HGRGDEAFFFADARAKNGKGRRQKRtVEGGGFWQGQRM--SVD 100 579***************************999**************744.456789*******************555599**96655..444 PP NAM 94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + e + k +L f+ ++ +kg ++ Wvmhey++ LPERR07G05500.1 101 GGggdgGLEMRWRKYVLSFF-ADGEKG-SSGWVMHEYAI 137 433343455589999*****.455554.89*******86 PP | |||||||
2 | NAM | 56 | 1.3e-17 | 249 | 370 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk........ 95 d +l+ +yL ++++gk+l+l+ v e+d +++ Pw+L ++ +++ +e +fF+ + k+ +g+r++r + gyW+ + v + LPERR07G05500.1 249 DGDLMGRYLLARIQGKPLPLDGVTLEADPLSSPPWRLLAE-HGRGDEAFFFADVRAKNGKGSRQRRtVEGGGYWQGQRMA--VDGErllvpdgg 339 789*****************99999************744.456789*******************555599**966552..222222334543 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 e + k +L f+ ++ +kg ++ Wvmhey++ LPERR07G05500.1 340 ALEIRWRKYVLSFF-ADGEKG-SSGWVMHEYAI 370 3444889999****.455554.89*******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-30 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.301 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-15 | 12 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 20.659 | 239 | 389 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-9 | 249 | 369 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-24 | 249 | 389 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MAAAKSADAL SPGFKFDPSD GDLVGRYLLA RIQGNPLPLD GIILEADPLS SPPWRLLAEH 60 GRGDEAFFFA DARAKNGKGR RQKRTVEGGG FWQGQRMSVD GGGGDGGLEM RWRKYVLSFF 120 ADGEKGSSGW VMHEYAITAP AEVASSTKRL YRIRFSGHGR KRKREPENQS SSHDDGGDRS 180 RRKTEDALLQ DLAPASPPVP PLAATDDSIS DGADQGLVDN YSRLFDAFGE IDVEELQSAL 240 REFAAPDIDG DLMGRYLLAR IQGKPLPLDG VTLEADPLSS PPWRLLAEHG RGDEAFFFAD 300 VRAKNGKGSR QRRTVEGGGY WQGQRMAVDG ERLLVPDGGA LEIRWRKYVL SFFADGEKGS 360 SGWVMHEYAI TSPADLASSA TRLYRIRFSG HGKKRKREPE NQSSSHDDGG GRARRKTEDA 420 LLQELAPASP HVPPLAAADD SISDGADQGL VDNYSRLFDA FGEIDVEELQ TALREFAAPD 480 MFVSPPEAEA NAVTSSAEME APEVAGFGVA EIVDEDDLSC IDFNFDVDAA HVAWA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G05500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638590.1 | 9e-85 | uncharacterized protein LOC107275325 | ||||
TrEMBL | A0A0D9WWJ4 | 0.0 | A0A0D9WWJ4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G05500.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 5e-13 | NAC domain containing protein 41 |