PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G04300.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

CPP

Protein Properties

Length: 772aa MW: 83421.1 Da PI: 6.7101

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G04300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.3	4.9e-16	453	491	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk LPERR07G04300.1 453 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 491 589**********************************96 PP
2	TCR	50.9	3e-16	538	577	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ LPERR07G04300.1 538 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCEGCKNTF 577 589***********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.8E-17	452	493	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.536	453	578	IPR005172	CRC domain
Pfam	PF03638	8.7E-12	455	490	IPR005172	CRC domain
SMART	SM01114	1.7E-17	538	579	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.0E-12	540	576	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MDSPLFSFID SLSPIEPLKS TYSASSIQAY QSLNITSISS IFTSPHDNAQ KELKLSKSSF 60 AEFSESEVCA DESDKNKPSK SSNAVRLFAC TSTLTQANQK MTSSASKGTV VPAEGLNDLP 120 QPGQFDTGSP DHNTRPCHGV RSDLKQGKVR KLQAFQTAKT NTSEKRKCLF STEVQLLDGS 180 QPGKLNDEIL GCEWDDLISA TSGELIAYDE DHKGVQLAVS NAESCGFLLS KLTGDGDISD 240 RTHPTSSTQT YYRELLMEED QTENAQLVLD GEKNISSEEI QDNLYEANEC IPTDYKVETQ 300 QQRGMRRRCL FFEAAGYSNR IMQKESVMDL SVSTGKGKSP VQNHPNPGKT PSPRVLRGIG 360 LHLNALALTP KGKMICQDPM TSLVPSSATQ QDAHGKLLSA GENFVNPGGD LLELQMDDDC 420 SAEIFLENDH DSSQSNSPQK KRRKADNGDD GEACKRCSCK KSKCLKLYCE CFAAGVYCSE 480 PCSCQGCLNK PIHEEIVLST RKQIEFRNPL AFAPKVIRTS DAGQDTGEDP NNTPASARHK 540 RGCNCKKSSC LKKYCECYQG GVGCSSNCRC EGCKNTFGKR DAAVSTEAEE MKQGVGEAEN 600 CGKEKENDLQ KANVQPEDHP FLELVPITPP FDVSSSLLKP PNFSSAKPPR PTKARTNSSR 660 SSSKAPGAVH SQKSSKIADS GSNEEMPDIL RNDASPGNCV KTSSPNGKRV SPPHNALSVS 720 PNRKGGRKLI LKSIPSFPSL IGDTSSGSSM NNSQSTFSTA SPLALGPSEA GC

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MDSPLFSFID SLSPIEPLKS TYSASSIQAY QSLNITSISS IFTSPHDNAQ KELKLSKSSF  60
AEFSESEVCA DESDKNKPSK SSNAVRLFAC TSTLTQANQK MTSSASKGTV VPAEGLNDLP  120
QPGQFDTGSP DHNTRPCHGV RSDLKQGKVR KLQAFQTAKT NTSEKRKCLF STEVQLLDGS  180
QPGKLNDEIL GCEWDDLISA TSGELIAYDE DHKGVQLAVS NAESCGFLLS KLTGDGDISD  240
RTHPTSSTQT YYRELLMEED QTENAQLVLD GEKNISSEEI QDNLYEANEC IPTDYKVETQ  300
QQRGMRRRCL FFEAAGYSNR IMQKESVMDL SVSTGKGKSP VQNHPNPGKT PSPRVLRGIG  360
LHLNALALTP KGKMICQDPM TSLVPSSATQ QDAHGKLLSA GENFVNPGGD LLELQMDDDC  420
SAEIFLENDH DSSQSNSPQK KRRKADNGDD GEACKRCSCK KSKCLKLYCE CFAAGVYCSE  480
PCSCQGCLNK PIHEEIVLST RKQIEFRNPL AFAPKVIRTS DAGQDTGEDP NNTPASARHK  540
RGCNCKKSSC LKKYCECYQG GVGCSSNCRC EGCKNTFGKR DAAVSTEAEE MKQGVGEAEN  600
CGKEKENDLQ KANVQPEDHP FLELVPITPP FDVSSSLLKP PNFSSAKPPR PTKARTNSSR  660
SSSKAPGAVH SQKSSKIADS GSNEEMPDIL RNDASPGNCV KTSSPNGKRV SPPHNALSVS  720
PNRKGGRKLI LKSIPSFPSL IGDTSSGSSM NNSQSTFSTA SPLALGPSEA GC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	455	575	12	120	Protein lin-54 homolog
5fd3_B	1e-16	455	575	12	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	439	443	KKRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G04300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065897	0.0	AK065897.1 Oryza sativa Japonica Group cDNA clone:J013048O08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646690.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0D9WW37	0.0	A0A0D9WW37_9ORYZ; Uncharacterized protein
STRING	LPERR07G04300.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6147	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-85	TESMIN/TSO1-like CXC 2