PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G03140.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YA
Protein Properties Length: 345aa    MW: 36986.2 Da    PI: 8.8081
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G03140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.45.5e-29199253358
        CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      p+YVNaKQ+++Il+RR +Rak+++++++ ++srkpylheSRh+hA+rR+RgsgGrF
  LPERR07G03140.1 199 PVYVNAKQFNGILRRRLARAKADRDHRV-SRSRKPYLHESRHRHAMRRARGSGGRF 253
                      9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.6E-32195256IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.236196256IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-29199253IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-22199221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-22230253IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MRSAALSFQE HGHGLQVITG RGGNGGAAAH AMPWWAGAGS QPLLGAAGEE SFCQLSNAIM  60
NDSRVLQDHH HHNHNQILAA GRQMQHHFPA MPPERRHNNP HHPHPPPAAE NSVMKFPIIS  120
GDSDLGKDLK FHDSSVPTIA AYSPLQEYQG HFELALAQSM VCTNFCNSDQ SYGVYSPYGA  180
QTMAGRMLLP PAIATDVGPV YVNAKQFNGI LRRRLARAKA DRDHRVSRSR KPYLHESRHR  240
HAMRRARGSG GRFLNTKNVS ASAADDAGEQ GASNKSSSES EAARVYPDED DMGGIGGGDF  300
HHAMGHLRSP AFFPSLAAMM DGGGGAGGGE GKWAAAATAH HVLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A3e-17199255461HAPB protein
4g92_A3e-17199255461HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237246RHRHAMRRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G03140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054547e-38AP005454.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0455F03.
GenBankAP0149637e-38AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126157e-38CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645550.11e-143nuclear transcription factor Y subunit A-2
TrEMBLA0A0D9WVN40.0A0A0D9WVN4_9ORYZ; Uncharacterized protein
STRINGLPERR07G03140.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.31e-26nuclear factor Y, subunit A10