PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G02820.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 481aa MW: 51565.1 Da PI: 8.7243 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.1 | 9.2e-40 | 55 | 203 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesss 79 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a ai++l+++ ++ +a + a++++ LPERR07G02820.3 55 SGGKDRHSKVYTAKGIRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLdtnsfpnhpasaslppPTAPAASLAAGEEE 148 689*************************************************************999887666655554422222222222222 PP TCP 80 ssasnsssg.....kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134 + g + +++ +s+ s++s+ s+l+l++ +sr kar+rarer++ + +n LPERR07G02820.3 149 ED------GdgdqqQVVTKSGCSSTSETSKGSVLSLSRsDSRVKARERARERSAAAAKREN 203 22......13333245555559999**************************9988776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-40 | 56 | 198 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.856 | 57 | 115 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.069 | 181 | 200 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MDICATPTPT TTKRSRPRPE EDDDGGGEPE AKRQQLPWAA QQHPSSRIYR VSRASGGKDR 60 HSKVYTAKGI RDRRVRLSVS TAIQFYDLQD RLGYDQPSKA IEWLIKAAAD AIDKLPSLDT 120 NSFPNHPASA SLPPPTAPAA SLAAGEEEED GDGDQQQVVT KSGCSSTSET SKGSVLSLSR 180 SDSRVKARER ARERSAAAAK RENHTDATTA TAAAASFTEL LTGMATGANE EHKPQPQHSW 240 QQPMATTADY IGFAAAANHP RKSGGHAMAH TFASPAPHLA SIAPIAMAPA QHFTLTPAGG 300 GGGEMTHFSF DHFMPVHAAA AASGGDYNLN FSMSSGLVGV HNRGTLQSNS NISGHHHHQH 360 HQQHQQQLQR LAAPLDTPSN NIPFLFSPAA TAADSHSGTG SGTPPPPTSR RRESTDQISR 420 RGIGLSWMEV KTSKRCNHSC EQYSQLDAAI SGKLMPAHLL NLLNIDLRNK LQSPQVCKIN 480 Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-28 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-28 | 62 | 116 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G02820.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165443.1 | 1e-143 | transcription factor PCF6-like | ||||
TrEMBL | A0A0D9WVI8 | 0.0 | A0A0D9WVI8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G02820.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-39 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |