PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G02310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 925aa MW: 102589 Da PI: 8.2323 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.9 | 5.7e-09 | 391 | 435 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v+q G+++W Ia +g++Rt+ qc r+q LPERR07G02310.1 391 NAWTAREEKKLILIVQQRGMNNWINIAVALGTHRTPFQCLARYQR 435 68*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.2e-14 | 445 | 488 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W +eEd+ll av+ +G++ W ++++ m gRt++qc +rw+k l LPERR07G02310.1 445 DWAKEEDLLLEAAVNTFGPN-WQLVSASMD-GRTGNQCSNRWRKTL 488 69****************77.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 51.1 | 3.1e-16 | 496 | 541 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+ +Ed++l avk++G+g+W++Ia+ ++ gRt qc +rw+++l LPERR07G02310.1 496 GRWSLDEDKRLMVAVKLFGSGSWNKIAQFIP-GRTQSQCNERWRNVL 541 8******************************.************986 PP | |||||||
4 | Myb_DNA-binding | 33.9 | 7.4e-11 | 548 | 592 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 g W +eEd +l+ v+++G+ W++Ia ++++ +Rt+++c rw+k+ LPERR07G02310.1 548 GEWRPEEDSKLLASVEEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 592 68*****************88.****945777.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.842 | 286 | 384 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.7E-5 | 290 | 386 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-11 | 292 | 309 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.41E-4 | 349 | 383 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-11 | 356 | 397 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.792 | 385 | 437 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.2E-5 | 389 | 439 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.59E-22 | 389 | 484 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-7 | 391 | 435 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.56E-6 | 392 | 437 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 398 | 448 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.567 | 438 | 488 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-12 | 442 | 490 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-12 | 445 | 487 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-9 | 446 | 488 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-14 | 449 | 491 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.971 | 489 | 545 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 492 | 543 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 494 | 543 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.11E-26 | 494 | 589 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-15 | 496 | 541 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.82E-11 | 497 | 541 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-16 | 544 | 597 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-8 | 546 | 595 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-9 | 548 | 592 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.57 | 548 | 597 | IPR017930 | Myb domain |
CDD | cd00167 | 1.35E-9 | 549 | 592 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 925 aa Download sequence Send to blast |
MDFYSDDDDD SDAAFDEEFH NDMEAVRHSC IITGNDPDAA VAPVSDCLAA DAPAAAADGS 60 SDDDDEEEED DLALVRSIRE NLLLSKSSPS SPLTRPICAW PPSDSEDEDD DLETLRAIQR 120 RFSHYHSGTS SGSEIEMKTD ASKEWSVNLI ANGPDEEIDL EKQNNKEAIT RTGFPKAALL 180 LVDALKKNRA CQKFIRRKMI NIEAKIEENK DLRDRVKCLL DYQLSCRKAF GKMLCQKEDP 240 RVRLISSQKP CAQSSKNKDK KMPALFLGPA DNPHVSKYKM VLKQFPMSLQ KQPWSDVEKD 300 KLAKGLKQQY QEALILNSMN NGSSAGDFSA VDMAYALTNT AGNFEVTPES LRSVLPLINW 360 DKISAMYLPG RSGAECESRW LNWDDPLINH NAWTAREEKK LILIVQQRGM NNWINIAVAL 420 GTHRTPFQCL ARYQRSLNHC ILNKDWAKEE DLLLEAAVNT FGPNWQLVSA SMDGRTGNQC 480 SNRWRKTLNP ERSRVGRWSL DEDKRLMVAV KLFGSGSWNK IAQFIPGRTQ SQCNERWRNV 540 LDPDIDLGEW RPEEDSKLLA SVEEFGPCWS KIAGAKIPHR TDNMCLRRWR KLCQHKLPSV 600 KAAQQIKKAI FQSNFVDRET ERPAIAPSDL MSLVSSKVDA SHENSASAQV KKPRKGSRIP 660 CEDNILPSDT LNSSTPMNLS MDAEAAVNTT TSSSRKKPSR SRTKKQTDEN LAVPDDANNS 720 SNCSSGARKR KRSITDNNQV AQKKSGCSTS VDNEVGTKGK AGSTSVGEEG TAKKRRMRGS 780 LSGKEGEVNK RMRGSVSGVH EGATKQRRGS VSTDNHGVVM KSKRAPSRKS AKESSTVDNK 840 ANEERDANTG NVNNVKHMSM PIPKQINMIE GSAQINGPTR VARHLYVSVR PVNNMVLSNG 900 LSDDVSAIAV PTGPDPISVE NSNTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-23 | 362 | 652 | 8 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-23 | 362 | 652 | 8 | 157 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G02310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065452 | 0.0 | AK065452.1 Oryza sativa Japonica Group cDNA clone:J013025M19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883083.1 | 0.0 | myb-like protein L | ||||
TrEMBL | A0A0D9WVC2 | 0.0 | A0A0D9WVC2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G02310.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-150 | myb domain protein 4r1 |