PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G02250.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 291aa MW: 32437.2 Da PI: 4.9297

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G02250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.2	1.1e-34	33	143	2	107
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yL++k++gk+l++ e++ke+diyk++P+d+ +++ ++ekewyfF+ r +ky+++ r+nr+t +g+Wkatg d++++s LPERR07G02250.1 33 LPGFRFHPTDEELVTFYLRRKIAGKRLSI-EIVKEMDIYKHDPSDFLkTNTVGSEKEWYFFCLRGRKYRNSIRPNRVTGNGFWKATGIDRPICS 125 69*************************.89*********96345556889************************************ PP NAM 95 k.....kgelvglkktLv 107 + g +glkk+L LPERR07G02250.1 126 AaagngAGDCIGLKKSLE 143 977665555699999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-36	32	151	IPR003441	NAC domain
PROSITE profile	PS51005	32.956	32	189	IPR003441	NAC domain
Pfam	PF02365	3.8E-16	34	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVPSVDMKGS CGDQFEGEVI PRGQEEEDDD LVLPGFRFHP TDEELVTFYL RRKIAGKRLS 60 IEIVKEMDIY KHDPSDFLKT NTVGSEKEWY FFCLRGRKYR NSIRPNRVTG NGFWKATGID 120 RPICSAAAGN GAGDCIGLKK SLEVWTICRI FQRNITQKKQ PQQHLAVVAA AVAPPVPDST 180 SSITGSVESD SAGDDVVEYM NSLPPPPPPA ASNYAAVNSG YNSNNQHYFN QEQWNAAAPA 240 QNSPAMSAFH DQSILGSPET SDLYYKDGCS EDIYRMVMEL TDPSVFYDHY R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-31	22	142	4	118	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G02250.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646514.1	1e-123	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	1e-55	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0D9WVB5	0.0	A0A0D9WVB5_9ORYZ; Uncharacterized protein
STRING	LPERR07G02250.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-54	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]