PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G01640.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 497aa    MW: 52617.3 Da    PI: 6.276
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G01640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2249.6e-08171219955
              AP2   9 dkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  LPERR07G01640.1 171 HRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 219
                      789**********77776664346655.77******************98 PP
2AP223.71.2e-072622991555
              AP2  15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  LPERR07G01640.1 262 YKARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 299
                      5577777543...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.552163227IPR001471AP2/ERF domain
SMARTSM003808.6E-14170233IPR001471AP2/ERF domain
CDDcd000181.31E-12170227No hitNo description
PfamPF008472.9E-5171219IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-10171228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-9171228IPR001471AP2/ERF domain
PROSITE profilePS5103213.88237307IPR001471AP2/ERF domain
SMARTSM003804.7E-19259313IPR001471AP2/ERF domain
CDDcd000182.04E-16259309No hitNo description
Gene3DG3DSA:3.30.730.101.1E-12261307IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-11262308IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MTNSNNGNVA GGGGTNAAAS GWLGFSLSPH MASSMEEHHQ HVHQQQQQQQ VQPHGGGLFF  60
PSVTTAAAYG LAGDVSSGGY YSQLASMPLK SDGSLCIMEA LRRSDQDHHG PKLEDFLGAA  120
QPAAMALSLD NTSSFYYSGN GAAAGAGVHH HGGGYLQATP CDLYGGPAAP HRWTGRYEAH  180
LWDNSCKKEG QTRKGRQGGY DMEEKAARAY DLAALKYWGP STHINFPLED YQEELEEMKN  240
MTRQEYEEQW FLTGSLNVPW SYKARIGRVS GNKDLYLGTF STQEEAAEAY DVAAIKFRGL  300
NAVTNFDITR YDVDKIMASN TLLPADLARR NHPPTKSPNP HIAGATDIAA NANDIAIWKP  360
TTTQQHHHDA AAVLSGAAFS VLHDLVAVDN AAAATAAAHM SMSMSAASSL VTSLSNNEDS  420
REDSPDRSGG GLAMLFAKPS PAVAASQAAS KLMSAAAPMP LGSWVSSTSL PSGARGPPAA  480
VSIAHMAPLF AAWTDAA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G01640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098481e-95AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882595.11e-140AP2-like ethylene-responsive transcription factor CRL5 isoform X1
SwissprotQ84Z021e-142CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D9WV420.0A0A0D9WV42_9ORYZ; Uncharacterized protein
STRINGLPERR07G01640.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-80AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]