PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G01210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 355aa    MW: 37895.9 Da    PI: 7.4646
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G01210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.8e-32231286156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH++Fv+a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  LPERR07G01210.1 231 KARRCWSPELHRKFVSALQQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 286
                      68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.795228288IPR017930Myb domain
SuperFamilySSF466892.51E-17229289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-29229289IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-26231286IPR006447Myb domain, plants
PfamPF002491.4E-7233284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGLDVGEIGV GAADLSLDLK MFAAKSVVGR VRGSAMGDCI RKLEEEMCKI EVFRRELPLC  60
VRLLADVIDV MKEEVEKKEK VGDDEDAAGD KSSWMSTAQL WTGNSGGRED PEKQKQQEKG  120
IISSAATSNS GDGGGGFVPF KAVGSGAPGF ARPKPSLVIR KDDVVRMPDL SLLSPPAATA  180
VATDGDESRR HVVGFAQAAA RAAAMAPSGT ALTLQAQSQP ATLQQQQQAR KARRCWSPEL  240
HRKFVSALQQ LGGPQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHNRRV PSSTIVNQPI  300
VLMGGLWIPQ EQSSSQSGSP EGPLHFSGSG MAGGSSAATV SCEEEDGRSE SYGWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-14231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-14231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-14231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-14231284154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G01210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695377.11e-147PREDICTED: uncharacterized protein LOC102719878
TrEMBLA0A0D9WUZ50.0A0A0D9WUZ5_9ORYZ; Uncharacterized protein
STRINGLPERR07G01210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-39G2-like family protein